Analysis of interatomic Contacts of Structural Units in PDB entry:
2J1P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J1P entry

There are 2 chains in PDB entry 2J1P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 13ASN 307
B
 ASP 12ILE 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 2J1P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 32Right-handed alpha
Helix 2
2
A
37 43Right-handed alpha
Helix 3
3
A
54 67Right-handed alpha
Helix 4
4
A
76 82Right-handed alpha
Helix 5
5
A
88 93Right-handed alpha
Helix 6
6
A
108 114Right-handed alpha
Helix 7
7
A
114 137Right-handed alpha
Helix 8
8
A
142 158Right-handed alpha
Helix 9
9
A
161 169Right-handed alpha
Helix 10
10
A
176 208Right-handed alpha
Helix 11
11
A
211 240Right-handed alpha
Helix 12
12
A
265 284Right-handed alpha
Helix 13
13
A
292 305Right-handed alpha
Helix 14
14
B
12 32Right-handed alpha
Helix 15
15
B
37 43Right-handed alpha
Helix 16
16
B
47 51Right-handed 310
Helix 17
17
B
54 67Right-handed alpha
Helix 18
18
B
70 74Right-handed 310
Helix 19
19
B
76 82Right-handed alpha
Helix 20
20
B
88 94Right-handed alpha
Helix 21
21
B
108 114Right-handed alpha
Helix 22
22
B
114 137Right-handed alpha
Helix 23
23
B
142 158Right-handed alpha
Helix 24
24
B
161 171Right-handed alpha
Helix 25
25
B
181 193Right-handed alpha
Helix 26
26
B
193 208Right-handed alpha
Helix 27
27
B
211 241Right-handed alpha
Helix 28
28
B
265 283Right-handed alpha
Helix 29
29
B
288 302Right-handed alpha
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There are 2 sheets in PDB entry 2J1P. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
106 107anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
106 107anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il