Analysis of interatomic Contacts of Structural Units in PDB entry:
2J2J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2J2J entry

There are 6 chains in PDB entry 2J2J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 361	GLN 542
B	ALA 361	GLN 542
C	ALA 361	GLN 542
D	ALA 361	GLN 542
E	ALA 361	GLN 542
F	ALA 361	GLN 542

There are 24 helices in PDB entry 2J2J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	406	408	Right-handed 310
Helix 2	2	A	457	464	Right-handed 310
Helix 3	3	A	490	492	Right-handed 310
Helix 4	4	A	518	522	Right-handed 310
Helix 5	5	B	406	408	Right-handed 310
Helix 6	6	B	457	464	Right-handed 310
Helix 7	7	B	490	492	Right-handed 310
Helix 8	8	B	518	522	Right-handed 310
Helix 9	9	C	406	408	Right-handed 310
Helix 10	10	C	457	464	Right-handed 310
Helix 11	11	C	490	492	Right-handed 310
Helix 12	12	C	518	522	Right-handed 310
Helix 13	13	D	406	408	Right-handed 310
Helix 14	14	D	457	464	Right-handed 310
Helix 15	15	D	490	492	Right-handed 310
Helix 16	16	D	518	522	Right-handed 310
Helix 17	17	E	406	408	Right-handed 310
Helix 18	18	E	457	464	Right-handed 310
Helix 19	19	E	490	492	Right-handed 310
Helix 20	20	E	518	522	Right-handed 310
Helix 21	21	F	406	408	Right-handed 310
Helix 22	22	F	457	464	Right-handed 310
Helix 23	23	F	490	492	Right-handed 310
Helix 24	24	F	518	522	Right-handed 310

There are 21 sheets in PDB entry 2J2J. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, EA, EB, EC, FA, FB, FC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	377	first strand
Strand 2	A	380	391	anti-parallel
Strand 3	A	363	366	anti-parallel
Strand 4	A	443	444	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	377	first strand
Strand 2	A	380	391	anti-parallel
Strand 3	A	395	404	anti-parallel
Strand 4	A	533	538	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	411	first strand
Strand 2	A	526	527	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	424	first strand
Strand 2	A	510	517	anti-parallel
Strand 3	A	494	501	anti-parallel
Strand 4	A	474	481	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	377	first strand
Strand 2	B	380	391	anti-parallel
Strand 3	B	363	366	anti-parallel
Strand 4	B	443	444	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	377	first strand
Strand 2	B	380	391	anti-parallel
Strand 3	B	395	404	anti-parallel
Strand 4	B	533	538	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	411	first strand
Strand 2	B	526	527	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	424	first strand
Strand 2	B	510	517	anti-parallel
Strand 3	B	494	501	anti-parallel
Strand 4	B	474	481	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	377	first strand
Strand 2	C	380	391	anti-parallel
Strand 3	C	363	366	anti-parallel
Strand 4	C	443	444	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	377	first strand
Strand 2	C	380	391	anti-parallel
Strand 3	C	395	404	anti-parallel
Strand 4	C	533	538	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	411	first strand
Strand 2	C	526	527	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	418	424	first strand
Strand 2	C	510	517	anti-parallel
Strand 3	C	494	501	anti-parallel
Strand 4	C	474	481	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	375	377	first strand
Strand 2	D	380	391	anti-parallel
Strand 3	D	443	444	first strand
Strand 4	D	363	366	anti-parallel
Strand 5	D	380	391	anti-parallel
Strand 6	D	533	538	first strand
Strand 7	D	395	404	anti-parallel
Strand 8	D	380	391	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	411	first strand
Strand 2	D	526	527	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	424	first strand
Strand 2	D	510	517	anti-parallel
Strand 3	D	494	501	anti-parallel
Strand 4	D	474	481	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	375	377	first strand
Strand 2	E	380	391	anti-parallel
Strand 3	E	443	444	first strand
Strand 4	E	363	366	anti-parallel
Strand 5	E	380	391	anti-parallel
Strand 6	E	533	538	first strand
Strand 7	E	395	404	anti-parallel
Strand 8	E	380	391	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	410	411	first strand
Strand 2	E	526	527	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	418	424	first strand
Strand 2	E	510	517	anti-parallel
Strand 3	E	494	501	anti-parallel
Strand 4	E	474	481	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	375	377	first strand
Strand 2	F	380	391	anti-parallel
Strand 3	F	443	444	first strand
Strand 4	F	363	366	anti-parallel
Strand 5	F	380	391	anti-parallel
Strand 6	F	533	538	first strand
Strand 7	F	395	404	anti-parallel
Strand 8	F	380	391	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	410	411	first strand
Strand 2	F	526	527	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	418	424	first strand
Strand 2	F	510	517	anti-parallel
Strand 3	F	494	501	anti-parallel
Strand 4	F	474	481	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2J2J

Analysis of interatomic Contacts of Structural Units in PDB entry:
2J2J