Analysis of interatomic Contacts of Structural Units in PDB entry:
2J2K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J2K entry

There is 1 chain in PDB entry 2J2K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 69SER 680
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 2J2K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
70 84Right-handed alpha
Helix 2
2
A
93 104Right-handed alpha
Helix 3
3
A
109 126Right-handed alpha
Helix 4
4
A
130 159Right-handed alpha
Helix 5
5
A
165 185Right-handed alpha
Helix 6
6
A
186 189Right-handed 310
Helix 7
7
A
202 228Right-handed alpha
Helix 8
8
A
229 232Right-handed 310
Helix 9
9
A
234 276Right-handed alpha
Helix 10
10
A
278 283Right-handed 310
Helix 11
11
A
284 303Right-handed alpha
Helix 12
12
A
303 308Right-handed alpha
Helix 13
13
A
309 314Right-handed 310
Helix 14
14
A
333 338Right-handed alpha
Helix 15
15
A
346 353Right-handed alpha
Helix 16
16
A
416 419Right-handed 310
Helix 17
17
A
475 483Right-handed alpha
Helix 18
18
A
492 497Right-handed alpha
Helix 19
19
A
544 546Right-handed 310
Helix 20
20
A
624 629Right-handed alpha
Helix 21
21
A
631 635Right-handed 310
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There are 9 sheets in PDB entry 2J2K. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 195first strand
Strand 2
A
198 201anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
538 542parallel
Strand 3
A
667 676anti-parallel
Strand 4
A
566 568anti-parallel
Strand 5
A
554 556anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
538 542parallel
Strand 3
A
667 676anti-parallel
Strand 4
A
586 594anti-parallel
Strand 5
A
636 639anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 332first strand
Strand 2
A
520 524anti-parallel
Strand 3
A
499 504anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 397first strand
Strand 2
A
377 389anti-parallel
Strand 3
A
361 374anti-parallel
Strand 4
A
408 414anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 397first strand
Strand 2
A
377 389anti-parallel
Strand 3
A
401 402anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 467first strand
Strand 2
A
445 454anti-parallel
Strand 3
A
421 429anti-parallel
Strand 4
A
473 474anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
532 533first strand
Strand 2
A
578 579parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 575first strand
Strand 2
A
654 659anti-parallel
Strand 3
A
598 605anti-parallel
Strand 4
A
610 618anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il