Analysis of interatomic Contacts of Structural Units in PDB entry:
2J2W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J2W entry

There is 1 chain in PDB entry 2J2W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 207HIS 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2J2W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
239 246Right-handed alpha
Helix 2
2
A
266 286Right-handed alpha
Helix 3
3
A
306 312Right-handed alpha
Helix 4
4
A
337 386Right-handed alpha
Helix 5
5
A
388 400Right-handed alpha
Helix 6
6
A
406 419Right-handed alpha
Helix 7
7
A
420 439Right-handed 310
Helix 8
8
A
457 467Right-handed alpha
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There are 3 sheets in PDB entry 2J2W. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
249 252anti-parallel
Strand 3
A
217 221parallel
Strand 4
A
291 295parallel
Strand 5
A
319 323parallel
Strand 6
A
442 448parallel
Strand 7
A
473 474parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
237 238anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 299first strand
Strand 2
A
302 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il