Analysis of interatomic Contacts of Structural Units in PDB entry:
2J39


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J39 entry

There is 1 chain in PDB entry 2J39 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 57ALA 633
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2J39. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 62Right-handed alpha
Helix 2
2
A
67 83Right-handed alpha
Helix 3
3
A
87 118Right-handed alpha
Helix 4
4
A
124 137Right-handed alpha
Helix 5
5
A
138 141Right-handed 310
Helix 6
6
A
145 171Right-handed alpha
Helix 7
7
A
172 175Right-handed 310
Helix 8
8
A
177 211Right-handed alpha
Helix 9
9
A
219 229Right-handed alpha
Helix 10
10
A
229 234Right-handed alpha
Helix 11
11
A
235 240Right-handed 310
Helix 12
12
A
270 277Right-handed alpha
Helix 13
13
A
323 325Right-handed 310
Helix 14
14
A
404 406Right-handed 310
Helix 15
15
A
462 467Right-handed alpha
Helix 16
16
A
477 479Right-handed 310
Helix 17
17
A
579 589Right-handed alpha
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There are 8 sheets in PDB entry 2J39. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
471 475parallel
Strand 3
A
622 630anti-parallel
Strand 4
A
517 520anti-parallel
Strand 5
A
488 491anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
471 475parallel
Strand 3
A
622 630anti-parallel
Strand 4
A
544 551anti-parallel
Strand 5
A
593 596anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 256first strand
Strand 2
A
450 454anti-parallel
Strand 3
A
426 431anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
304 321anti-parallel
Strand 3
A
285 301anti-parallel
Strand 4
A
341 347anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
304 321anti-parallel
Strand 3
A
334 335anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 395first strand
Strand 2
A
382 386anti-parallel
Strand 3
A
353 358anti-parallel
Strand 4
A
401 402anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 363first strand
Strand 2
A
376 379anti-parallel
Strand 3
A
444 447parallel
Strand 4
A
434 435anti-parallel
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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 482first strand
Strand 2
A
527 535anti-parallel
Strand 3
A
605 612anti-parallel
Strand 4
A
556 562anti-parallel
Strand 5
A
565 572anti-parallel
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