Analysis of interatomic Contacts of Structural Units in PDB entry:
2J3I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J3I entry

There are 2 chains in PDB entry 2J3I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 345
B
 MET 1001GLU 1345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2J3I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 21Right-handed 310
Helix 2
2
A
53 58Right-handed alpha
Helix 3
3
A
130 134Right-handed 310
Helix 4
4
A
137 149Right-handed alpha
Helix 5
5
A
168 180Right-handed alpha
Helix 6
6
A
191 200Right-handed alpha
Helix 7
7
A
209 211Right-handed 310
Helix 8
8
A
213 222Right-handed alpha
Helix 9
9
A
235 245Right-handed alpha
Helix 10
10
A
256 261Right-handed alpha
Helix 11
11
A
272 278Right-handed alpha
Helix 12
12
A
285 291Right-handed 310
Helix 13
13
A
292 305Right-handed alpha
Helix 14
14
A
322 332Right-handed alpha
Helix 15
15
B
1019 1021Right-handed 310
Helix 16
16
B
1051 1056Right-handed 310
Helix 17
17
B
1128 1134Right-handed 310
Helix 18
18
B
1137 1149Right-handed alpha
Helix 19
19
B
1168 1178Right-handed alpha
Helix 20
20
B
1191 1198Right-handed alpha
Helix 21
21
B
1213 1222Right-handed alpha
Helix 22
22
B
1235 1245Right-handed alpha
Helix 23
23
B
1258 1262Right-handed 310
Helix 24
24
B
1270 1276Right-handed 310
Helix 25
25
B
1285 1290Right-handed 310
Helix 26
26
B
1293 1305Right-handed alpha
Helix 27
27
B
1318 1320Right-handed 310
Helix 28
28
B
1321 1329Right-handed alpha
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There are 9 sheets in PDB entry 2J3I. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 10first strand
Strand 2
A
23 29anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
41 50anti-parallel
Strand 3
A
79 89anti-parallel
Strand 4
A
99 105anti-parallel
Strand 5
A
120 121anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
41 50anti-parallel
Strand 3
A
337 341anti-parallel
Strand 4
A
313 317parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
183 187parallel
Strand 3
A
159 161parallel
Strand 4
A
228 231parallel
Strand 5
A
251 253parallel
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There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 282first strand
Strand 2
B
1280 1283anti-parallel
Strand 3
B
1250 1253parallel
Strand 4
B
1228 1231parallel
Strand 5
B
1158 1161parallel
Strand 6
B
1182 1187parallel
Strand 7
B
1204 1207parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1002 1006first strand
Strand 2
B
1027 1031anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1009 1010first strand
Strand 2
B
1023 1024anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1111 1112first strand
Strand 2
B
1041 1045anti-parallel
Strand 3
B
1079 1088anti-parallel
Strand 4
B
1099 1105anti-parallel
Strand 5
B
1120 1121anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1047 1049first strand
Strand 2
B
1337 1341anti-parallel
Strand 3
B
1313 1314parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il