Analysis of interatomic Contacts of Structural Units in PDB entry:
2J3M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J3M entry

There are 2 chains in PDB entry 2J3M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 565
B
 MET 1MET 565
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 2J3M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 6Right-handed 310
Helix 2
2
A
20 29Right-handed alpha
Helix 3
3
A
43 63Right-handed alpha
Helix 4
4
A
77 84Right-handed alpha
Helix 5
5
A
84 89Right-handed alpha
Helix 6
6
A
110 122Right-handed alpha
Helix 7
7
A
125 128Right-handed 310
Helix 8
8
A
147 152Right-handed 310
Helix 9
9
A
166 188Right-handed alpha
Helix 10
10
A
262 271Right-handed alpha
Helix 11
11
A
301 310Right-handed alpha
Helix 12
12
A
318 327Right-handed alpha
Helix 13
13
A
329 333Right-handed 310
Helix 14
14
A
349 353Right-handed 310
Helix 15
15
A
416 423Right-handed alpha
Helix 16
16
A
445 457Right-handed alpha
Helix 17
17
A
482 499Right-handed alpha
Helix 18
18
A
511 523Right-handed alpha
Helix 19
19
A
533 536Right-handed 310
Helix 20
20
A
556 565Right-handed alpha
Helix 21
21
B
3 6Right-handed 310
Helix 22
22
B
20 29Right-handed alpha
Helix 23
23
B
43 63Right-handed alpha
Helix 24
24
B
77 84Right-handed alpha
Helix 25
25
B
84 89Right-handed alpha
Helix 26
26
B
110 122Right-handed alpha
Helix 27
27
B
125 128Right-handed 310
Helix 28
28
B
147 152Right-handed 310
Helix 29
29
B
166 188Right-handed alpha
Helix 30
30
B
262 271Right-handed alpha
Helix 31
31
B
273 276Right-handed 310
Helix 32
32
B
301 310Right-handed alpha
Helix 33
33
B
318 327Right-handed alpha
Helix 34
34
B
349 351Right-handed 310
Helix 35
35
B
416 423Right-handed alpha
Helix 36
36
B
445 456Right-handed alpha
Helix 37
37
B
482 499Right-handed alpha
Helix 38
38
B
511 523Right-handed alpha
Helix 39
39
B
531 536Right-handed 310
Helix 40
40
B
556 565Right-handed alpha
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There are 15 sheets in PDB entry 2J3M. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG, BH,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
39 42anti-parallel
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There are 10 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
130 139parallel
Strand 3
A
154 164anti-parallel
Strand 4
A
437 444anti-parallel
Strand 5
A
400 415parallel
Strand 6
A
207 213anti-parallel
Strand 7
A
192 196anti-parallel
Strand 8
A
230 232anti-parallel
Strand 9
A
219 224anti-parallel
Strand 10
A
67 68first strand
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
103 106anti-parallel
Strand 3
A
94 97anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 256first strand
Strand 2
A
365 370anti-parallel
Strand 3
A
356 359anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 316first strand
Strand 2
A
278 285anti-parallel
Strand 3
A
288 295anti-parallel
Strand 4
A
343 347parallel
Strand 5
A
381 382parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 427first strand
Strand 2
A
433 435anti-parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 506first strand
Strand 2
A
473 477parallel
Strand 3
A
526 530parallel
Strand 4
A
538 543anti-parallel
Strand 5
A
548 553anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 36first strand
Strand 2
B
39 42anti-parallel
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There are 10 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
130 139parallel
Strand 3
B
154 164anti-parallel
Strand 4
B
437 444anti-parallel
Strand 5
B
400 415parallel
Strand 6
B
207 213anti-parallel
Strand 7
B
192 196anti-parallel
Strand 8
B
230 232anti-parallel
Strand 9
B
219 224anti-parallel
Strand 10
B
67 68first strand
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 76first strand
Strand 2
B
103 106anti-parallel
Strand 3
B
94 97anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 256first strand
Strand 2
B
365 370anti-parallel
Strand 3
B
356 359anti-parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 316first strand
Strand 2
B
278 285anti-parallel
Strand 3
B
288 295anti-parallel
Strand 4
B
343 347parallel
Strand 5
B
380 382parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
425 427first strand
Strand 2
B
433 435anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 458first strand
Strand 2
B
461 462anti-parallel
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There are 5 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
503 506first strand
Strand 2
B
473 477parallel
Strand 3
B
526 530parallel
Strand 4
B
538 543anti-parallel
Strand 5
B
549 553anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il