Analysis of interatomic Contacts of Structural Units in PDB entry:
2J3U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2J3U entry

There are 6 chains in PDB entry 2J3U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 72	ALA 288
B	ASN 71	ALA 288
C	THR 75	ALA 288
D	CYS 73	ALA 288
E	ASN 71	ALA 288
F	PRO 72	ALA 288

There are 39 helices in PDB entry 2J3U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	79	86	Right-handed alpha
Helix 2	2	A	111	115	Right-handed 310
Helix 3	3	A	133	140	Right-handed alpha
Helix 4	4	A	151	160	Right-handed alpha
Helix 5	5	A	210	214	Right-handed 310
Helix 6	6	A	231	236	Right-handed alpha
Helix 7	7	B	71	76	Right-handed alpha
Helix 8	8	B	79	86	Right-handed alpha
Helix 9	9	B	133	140	Right-handed alpha
Helix 10	10	B	151	160	Right-handed alpha
Helix 11	11	B	189	193	Right-handed 310
Helix 12	12	B	210	214	Right-handed 310
Helix 13	13	B	231	236	Right-handed alpha
Helix 14	14	C	79	86	Right-handed alpha
Helix 15	15	C	111	115	Right-handed 310
Helix 16	16	C	133	140	Right-handed alpha
Helix 17	17	C	151	160	Right-handed alpha
Helix 18	18	C	189	193	Right-handed 310
Helix 19	19	C	210	214	Right-handed 310
Helix 20	20	C	231	236	Right-handed alpha
Helix 21	21	D	79	86	Right-handed alpha
Helix 22	22	D	133	140	Right-handed alpha
Helix 23	23	D	151	160	Right-handed alpha
Helix 24	24	D	189	193	Right-handed 310
Helix 25	25	D	210	214	Right-handed 310
Helix 26	26	D	231	236	Right-handed alpha
Helix 27	27	E	71	76	Right-handed alpha
Helix 28	28	E	79	86	Right-handed alpha
Helix 29	29	E	133	140	Right-handed alpha
Helix 30	30	E	151	160	Right-handed alpha
Helix 31	31	E	189	193	Right-handed 310
Helix 32	32	E	210	214	Right-handed 310
Helix 33	33	E	231	236	Right-handed alpha
Helix 34	34	F	79	86	Right-handed alpha
Helix 35	35	F	133	140	Right-handed alpha
Helix 36	36	F	151	160	Right-handed alpha
Helix 37	37	F	189	193	Right-handed 310
Helix 38	38	F	210	214	Right-handed 310
Helix 39	39	F	231	236	Right-handed alpha

There are 23 sheets in PDB entry 2J3U. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, DA, DB, C, DD, EA, EB, EC, ED, FA, FB, FC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	97	first strand
Strand 2	A	103	109	anti-parallel
Strand 3	A	117	123	anti-parallel
Strand 4	A	280	287	anti-parallel
Strand 5	A	164	171	anti-parallel
Strand 6	A	177	187	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	97	first strand
Strand 2	A	103	109	anti-parallel
Strand 3	A	117	123	anti-parallel
Strand 4	A	148	149	anti-parallel
Strand 5	A	141	142	anti-parallel

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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	97	first strand
Strand 2	B	103	109	anti-parallel
Strand 3	B	117	123	anti-parallel
Strand 4	B	280	288	anti-parallel
Strand 5	B	163	171	anti-parallel
Strand 6	B	177	182	anti-parallel
Strand 7	B	201	203	anti-parallel

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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	97	first strand
Strand 2	B	103	109	anti-parallel
Strand 3	B	117	123	anti-parallel
Strand 4	B	148	149	anti-parallel
Strand 5	B	141	142	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	187	first strand
Strand 2	B	196	198	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	249	first strand
Strand 2	B	267	268	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	258	first strand
Strand 2	B	276	277	anti-parallel

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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	97	first strand
Strand 2	C	103	109	anti-parallel
Strand 3	C	117	123	anti-parallel
Strand 4	C	280	287	anti-parallel
Strand 5	C	164	171	anti-parallel
Strand 6	C	177	182	anti-parallel
Strand 7	C	201	203	anti-parallel

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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	97	first strand
Strand 2	C	103	109	anti-parallel
Strand 3	C	117	123	anti-parallel
Strand 4	C	148	149	anti-parallel
Strand 5	C	141	142	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	187	first strand
Strand 2	C	196	198	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	249	first strand
Strand 2	C	267	268	anti-parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	258	first strand
Strand 2	C	276	277	anti-parallel

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There are 11 strands in DA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	97	first strand
Strand 2	D	103	109	anti-parallel
Strand 3	D	117	123	anti-parallel
Strand 4	D	141	142	first strand
Strand 5	D	148	149	anti-parallel
Strand 6	D	117	123	anti-parallel
Strand 7	D	201	203	first strand
Strand 8	D	179	182	anti-parallel
Strand 9	D	164	171	anti-parallel
Strand 10	D	280	287	anti-parallel
Strand 11	D	117	123	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	187	first strand
Strand 2	D	196	198	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	249	first strand
Strand 2	D	267	268	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	258	first strand
Strand 2	D	276	277	anti-parallel

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There are 11 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	97	first strand
Strand 2	E	103	109	anti-parallel
Strand 3	E	117	123	anti-parallel
Strand 4	E	141	142	first strand
Strand 5	E	148	149	anti-parallel
Strand 6	E	117	123	anti-parallel
Strand 7	E	201	203	first strand
Strand 8	E	177	182	anti-parallel
Strand 9	E	164	171	anti-parallel
Strand 10	E	280	287	anti-parallel
Strand 11	E	117	123	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	185	187	first strand
Strand 2	E	196	198	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	248	249	first strand
Strand 2	E	267	268	anti-parallel

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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	257	258	first strand
Strand 2	E	276	277	anti-parallel

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There are 11 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	97	first strand
Strand 2	F	103	109	anti-parallel
Strand 3	F	117	123	anti-parallel
Strand 4	F	141	142	first strand
Strand 5	F	148	149	anti-parallel
Strand 6	F	117	123	anti-parallel
Strand 7	F	201	203	first strand
Strand 8	F	177	182	anti-parallel
Strand 9	F	164	171	anti-parallel
Strand 10	F	280	287	anti-parallel
Strand 11	F	117	123	anti-parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	185	187	first strand
Strand 2	F	196	198	anti-parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	257	258	first strand
Strand 2	F	276	277	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2J3U

Analysis of interatomic Contacts of Structural Units in PDB entry:
2J3U