Analysis of interatomic Contacts of Structural Units in PDB entry:
2J3V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J3V entry

There is 1 chain in PDB entry 2J3V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2ILE 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2J3V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 31Right-handed alpha
Helix 2
2
A
34 44Right-handed alpha
Helix 3
3
A
46 60Right-handed alpha
Helix 4
4
A
64 74Right-handed alpha
Helix 5
5
A
76 91Right-handed alpha
Helix 6
6
A
106 110Right-handed 310
Helix 7
7
A
125 137Right-handed alpha
Helix 8
8
A
152 156Right-handed 310
Helix 9
9
A
226 235Right-handed alpha
Helix 10
10
A
236 241Right-handed alpha
Helix 11
11
A
242 255Right-handed alpha
Helix 12
12
A
256 266Right-handed alpha
Helix 13
13
A
272 287Right-handed alpha
Helix 14
14
A
303 307Right-handed 310
Helix 15
15
A
325 337Right-handed alpha
Helix 16
16
A
355 359Right-handed 310
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There are 5 sheets in PDB entry 2J3V. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 102first strand
Strand 2
A
162 168anti-parallel
Strand 3
A
206 217parallel
Strand 4
A
191 203anti-parallel
Strand 5
A
141 143anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
183 187anti-parallel
Strand 3
A
175 178first strand
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 301first strand
Strand 2
A
363 369anti-parallel
Strand 3
A
414 426parallel
Strand 4
A
396 411anti-parallel
Strand 5
A
339 343anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 318first strand
Strand 2
A
321 324anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
389 392anti-parallel
Strand 3
A
375 377anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il