Analysis of interatomic Contacts of Structural Units in PDB entry:
2J3W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J3W entry

There are 6 chains in PDB entry 2J3W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -1SER 140
B
 LYS 21ARG 188
C
 LEU -1SER 140
D
 LYS 13ASP 173
E
 LYS 12ASP 173
F
 THR 22ARG 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 2J3W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 29Right-handed 310
Helix 2
2
A
30 53Right-handed alpha
Helix 3
3
A
54 56Right-handed 310
Helix 4
4
A
91 112Right-handed alpha
Helix 5
5
A
123 138Right-handed alpha
Helix 6
6
B
26 42Right-handed alpha
Helix 7
7
B
46 74Right-handed alpha
Helix 8
8
B
81 91Right-handed alpha
Helix 9
9
B
91 99Right-handed alpha
Helix 10
10
B
122 127Right-handed 310
Helix 11
11
B
137 154Right-handed alpha
Helix 12
12
B
175 185Right-handed alpha
Helix 13
13
C
35 55Right-handed alpha
Helix 14
14
C
91 111Right-handed alpha
Helix 15
15
C
123 138Right-handed alpha
Helix 16
16
D
16 34Right-handed alpha
Helix 17
17
D
36 61Right-handed alpha
Helix 18
18
D
70 81Right-handed alpha
Helix 19
19
D
81 87Right-handed alpha
Helix 20
20
D
110 114Right-handed 310
Helix 21
21
D
119 123Right-handed 310
Helix 22
22
D
129 141Right-handed alpha
Helix 23
23
D
153 157Right-handed 310
Helix 24
24
E
16 34Right-handed alpha
Helix 25
25
E
36 62Right-handed alpha
Helix 26
26
E
70 81Right-handed alpha
Helix 27
27
E
81 87Right-handed alpha
Helix 28
28
E
110 114Right-handed 310
Helix 29
29
E
119 123Right-handed 310
Helix 30
30
E
129 141Right-handed alpha
Helix 31
31
E
153 157Right-handed 310
Helix 32
32
F
25 42Right-handed alpha
Helix 33
33
F
46 74Right-handed alpha
Helix 34
34
F
81 91Right-handed alpha
Helix 35
35
F
91 99Right-handed alpha
Helix 36
36
F
122 127Right-handed 310
Helix 37
37
F
137 154Right-handed alpha
Helix 38
38
F
175 186Right-handed alpha
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There are 8 sheets in PDB entry 2J3W. Click on sheet of interest to get list of strands forming it: AA, BA, BB, CA, A, DB, EA, FA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 22first strand
Strand 2
A
5 10anti-parallel
Strand 3
A
82 87anti-parallel
Strand 4
A
70 76anti-parallel
Strand 5
A
60 67anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 25first strand
Strand 2
E
13 15anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 108first strand
Strand 2
B
111 119anti-parallel
Strand 3
B
168 174anti-parallel
Strand 4
B
158 164anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 22first strand
Strand 2
C
5 10anti-parallel
Strand 3
C
82 87anti-parallel
Strand 4
C
70 76anti-parallel
Strand 5
C
60 67anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 15first strand
Strand 2
F
23 24anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 94first strand
Strand 2
D
102 107anti-parallel
Strand 3
D
161 170anti-parallel
Strand 4
D
144 152anti-parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
92 94first strand
Strand 2
E
102 107anti-parallel
Strand 3
E
161 170anti-parallel
Strand 4
E
144 152anti-parallel
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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
104 107first strand
Strand 2
F
114 119anti-parallel
Strand 3
F
168 174anti-parallel
Strand 4
F
158 164anti-parallel
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