Analysis of interatomic Contacts of Structural Units in PDB entry:
2J3Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2J3Z entry

There are 3 chains in PDB entry 2J3Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	ILE 431
B	PRO 2	ILE 431
C	PRO 2	ILE 378

There are 96 helices in PDB entry 2J3Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	15	32	Right-handed alpha
Helix 2	2	A	35	45	Right-handed alpha
Helix 3	3	A	47	61	Right-handed alpha
Helix 4	4	A	65	75	Right-handed alpha
Helix 5	5	A	77	92	Right-handed alpha
Helix 6	6	A	106	110	Right-handed 310
Helix 7	7	A	126	137	Right-handed alpha
Helix 8	8	A	153	156	Right-handed 310
Helix 9	9	A	227	236	Right-handed alpha
Helix 10	10	A	238	241	Right-handed alpha
Helix 11	11	A	243	255	Right-handed alpha
Helix 12	12	A	256	267	Right-handed alpha
Helix 13	13	A	273	288	Right-handed alpha
Helix 14	14	A	304	307	Right-handed 310
Helix 15	15	A	326	337	Right-handed alpha
Helix 16	16	A	356	359	Right-handed 310
Helix 17	17	B	15	32	Right-handed alpha
Helix 18	18	B	35	45	Right-handed alpha
Helix 19	19	B	47	61	Right-handed alpha
Helix 20	20	B	65	75	Right-handed alpha
Helix 21	21	B	77	92	Right-handed alpha
Helix 22	22	B	106	110	Right-handed 310
Helix 23	23	B	126	137	Right-handed alpha
Helix 24	24	B	153	156	Right-handed 310
Helix 25	25	B	227	236	Right-handed alpha
Helix 26	26	B	238	241	Right-handed alpha
Helix 27	27	B	243	255	Right-handed alpha
Helix 28	28	B	256	267	Right-handed alpha
Helix 29	29	B	273	288	Right-handed alpha
Helix 30	30	B	304	307	Right-handed 310
Helix 31	31	B	326	337	Right-handed alpha
Helix 32	32	B	356	359	Right-handed 310
Helix 33	33	C	15	32	Right-handed alpha
Helix 34	34	C	35	45	Right-handed alpha
Helix 35	35	C	47	61	Right-handed alpha
Helix 36	36	C	65	75	Right-handed alpha
Helix 37	37	C	77	92	Right-handed alpha
Helix 38	38	C	106	110	Right-handed 310
Helix 39	39	C	126	137	Right-handed alpha
Helix 40	40	C	153	156	Right-handed 310
Helix 41	41	C	227	236	Right-handed alpha
Helix 42	42	C	238	241	Right-handed alpha
Helix 43	43	C	243	255	Right-handed alpha
Helix 44	44	C	256	267	Right-handed alpha
Helix 45	45	C	273	288	Right-handed alpha
Helix 46	46	C	304	307	Right-handed 310
Helix 47	47	C	326	337	Right-handed alpha
Helix 48	48	C	356	359	Right-handed 310
Helix 49	49	D	15	32	Right-handed alpha
Helix 50	50	D	35	45	Right-handed alpha
Helix 51	51	D	47	61	Right-handed alpha
Helix 52	52	D	65	75	Right-handed alpha
Helix 53	53	D	77	92	Right-handed alpha
Helix 54	54	D	106	110	Right-handed 310
Helix 55	55	D	126	137	Right-handed alpha
Helix 56	56	D	153	156	Right-handed 310
Helix 57	57	D	227	236	Right-handed alpha
Helix 58	58	D	238	241	Right-handed alpha
Helix 59	59	D	243	255	Right-handed alpha
Helix 60	60	D	256	267	Right-handed alpha
Helix 61	61	D	273	288	Right-handed alpha
Helix 62	62	D	304	307	Right-handed 310
Helix 63	63	D	326	337	Right-handed alpha
Helix 64	64	D	356	359	Right-handed 310
Helix 65	65	E	15	32	Right-handed alpha
Helix 66	66	E	35	45	Right-handed alpha
Helix 67	67	E	47	61	Right-handed alpha
Helix 68	68	E	65	75	Right-handed alpha
Helix 69	69	E	77	92	Right-handed alpha
Helix 70	70	E	106	110	Right-handed 310
Helix 71	71	E	126	137	Right-handed alpha
Helix 72	72	E	153	156	Right-handed 310
Helix 73	73	E	227	236	Right-handed alpha
Helix 74	74	E	238	241	Right-handed alpha
Helix 75	75	E	243	255	Right-handed alpha
Helix 76	76	E	256	267	Right-handed alpha
Helix 77	77	E	273	288	Right-handed alpha
Helix 78	78	E	304	307	Right-handed 310
Helix 79	79	E	326	337	Right-handed alpha
Helix 80	80	E	356	359	Right-handed 310
Helix 81	81	F	15	32	Right-handed alpha
Helix 82	82	F	35	45	Right-handed alpha
Helix 83	83	F	47	61	Right-handed alpha
Helix 84	84	F	65	75	Right-handed alpha
Helix 85	85	F	77	92	Right-handed alpha
Helix 86	86	F	106	110	Right-handed 310
Helix 87	87	F	126	137	Right-handed alpha
Helix 88	88	F	153	156	Right-handed 310
Helix 89	89	F	227	236	Right-handed alpha
Helix 90	90	F	238	241	Right-handed alpha
Helix 91	91	F	243	255	Right-handed alpha
Helix 92	92	F	256	267	Right-handed alpha
Helix 93	93	F	273	288	Right-handed alpha
Helix 94	94	F	304	307	Right-handed 310
Helix 95	95	F	326	337	Right-handed alpha
Helix 96	96	F	356	359	Right-handed 310

There are 30 sheets in PDB entry 2J3Z. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, A, DB, C, DD, DE, EA, EB, EC, ED, EE, FA, FB, FC, FD, FE,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	102	first strand
Strand 2	A	162	168	anti-parallel
Strand 3	A	206	217	parallel
Strand 4	A	191	203	anti-parallel
Strand 5	A	141	143	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	150	first strand
Strand 2	A	183	187	anti-parallel
Strand 3	A	175	178	first strand

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	301	first strand
Strand 2	A	363	369	anti-parallel
Strand 3	A	414	426	parallel
Strand 4	A	396	411	anti-parallel
Strand 5	A	339	343	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	318	first strand
Strand 2	A	321	324	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	350	first strand
Strand 2	A	389	392	anti-parallel
Strand 3	A	375	377	anti-parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	102	first strand
Strand 2	B	162	168	anti-parallel
Strand 3	B	206	217	parallel
Strand 4	B	191	203	anti-parallel
Strand 5	B	141	143	anti-parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	150	first strand
Strand 2	B	183	187	anti-parallel
Strand 3	B	175	178	first strand

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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	301	first strand
Strand 2	B	363	369	anti-parallel
Strand 3	B	414	426	parallel
Strand 4	B	396	411	anti-parallel
Strand 5	B	339	343	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	318	first strand
Strand 2	B	321	324	anti-parallel

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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	350	first strand
Strand 2	B	389	392	anti-parallel
Strand 3	B	375	377	anti-parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	102	first strand
Strand 2	C	162	168	anti-parallel
Strand 3	C	206	217	parallel
Strand 4	C	191	203	anti-parallel
Strand 5	C	141	143	anti-parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	150	first strand
Strand 2	C	183	187	anti-parallel
Strand 3	C	175	178	first strand

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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	301	first strand
Strand 2	C	363	369	anti-parallel
Strand 3	C	414	426	parallel
Strand 4	C	396	411	anti-parallel
Strand 5	C	339	343	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	318	first strand
Strand 2	C	321	324	anti-parallel

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There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	350	first strand
Strand 2	C	389	392	anti-parallel
Strand 3	C	375	377	anti-parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	102	first strand
Strand 2	D	162	168	anti-parallel
Strand 3	D	206	217	parallel
Strand 4	D	191	203	anti-parallel
Strand 5	D	141	143	anti-parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	150	first strand
Strand 2	D	183	187	anti-parallel
Strand 3	D	175	178	first strand

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	295	301	first strand
Strand 2	D	363	369	anti-parallel
Strand 3	D	414	426	parallel
Strand 4	D	396	411	anti-parallel
Strand 5	D	339	343	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	315	318	first strand
Strand 2	D	321	324	anti-parallel

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There are 3 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	350	first strand
Strand 2	D	389	392	anti-parallel
Strand 3	D	375	377	anti-parallel

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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	102	first strand
Strand 2	E	162	168	anti-parallel
Strand 3	E	206	217	parallel
Strand 4	E	191	203	anti-parallel
Strand 5	E	141	143	anti-parallel

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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	150	first strand
Strand 2	E	183	187	anti-parallel
Strand 3	E	175	178	first strand

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There are 5 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	295	301	first strand
Strand 2	E	363	369	anti-parallel
Strand 3	E	414	426	parallel
Strand 4	E	396	411	anti-parallel
Strand 5	E	339	343	anti-parallel

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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	315	318	first strand
Strand 2	E	321	324	anti-parallel

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There are 3 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	347	350	first strand
Strand 2	E	389	392	anti-parallel
Strand 3	E	375	377	anti-parallel

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There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	102	first strand
Strand 2	F	162	168	anti-parallel
Strand 3	F	206	217	parallel
Strand 4	F	191	203	anti-parallel
Strand 5	F	141	143	anti-parallel

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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	150	first strand
Strand 2	F	183	187	anti-parallel
Strand 3	F	175	178	first strand

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There are 5 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	295	301	first strand
Strand 2	F	363	369	anti-parallel
Strand 3	F	414	426	parallel
Strand 4	F	396	411	anti-parallel
Strand 5	F	339	343	anti-parallel

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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	315	318	first strand
Strand 2	F	321	324	anti-parallel

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There are 3 strands in FE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	347	350	first strand
Strand 2	F	389	392	anti-parallel
Strand 3	F	375	377	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2J3Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
2J3Z