Analysis of interatomic Contacts of Structural Units in PDB entry:
2J41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J41 entry

There are 4 chains in PDB entry 2J41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4LYS 197
B
 LYS 5ALA 205
C
 LYS 5LYS 197
D
 LYS 5LYS 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 2J41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 29Right-handed alpha
Helix 2
2
A
59 69Right-handed alpha
Helix 3
3
A
87 96Right-handed alpha
Helix 4
4
A
105 107Right-handed 310
Helix 5
5
A
108 116Right-handed alpha
Helix 6
6
A
156 164Right-handed 310
Helix 7
7
A
172 189Right-handed alpha
Helix 8
8
A
190 197Right-handed alpha
Helix 9
9
B
18 27Right-handed alpha
Helix 10
10
B
59 69Right-handed alpha
Helix 11
11
B
87 96Right-handed alpha
Helix 12
12
B
105 116Right-handed alpha
Helix 13
13
B
158 162Right-handed 310
Helix 14
14
B
172 189Right-handed alpha
Helix 15
15
B
190 205Right-handed alpha
Helix 16
16
C
18 29Right-handed alpha
Helix 17
17
C
59 69Right-handed alpha
Helix 18
18
C
87 96Right-handed alpha
Helix 19
19
C
105 116Right-handed alpha
Helix 20
20
C
150 161Right-handed alpha
Helix 21
21
C
172 189Right-handed alpha
Helix 22
22
C
190 197Right-handed alpha
Helix 23
23
D
18 29Right-handed alpha
Helix 24
24
D
59 69Right-handed alpha
Helix 25
25
D
87 96Right-handed alpha
Helix 26
26
D
105 116Right-handed alpha
Helix 27
27
D
155 162Right-handed alpha
Helix 28
28
D
172 190Right-handed alpha
Helix 29
29
D
190 206Right-handed alpha
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There are 8 sheets in PDB entry 2J41. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
99 103parallel
Strand 3
A
8 12parallel
Strand 4
A
120 125parallel
Strand 5
A
166 169parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
40 41parallel
Strand 3
A
81 86anti-parallel
Strand 4
A
72 78anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
100 103parallel
Strand 3
B
8 12parallel
Strand 4
B
120 125parallel
Strand 5
B
166 169parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
40 41parallel
Strand 3
B
81 86anti-parallel
Strand 4
B
72 78anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 36first strand
Strand 2
C
100 103parallel
Strand 3
C
8 12parallel
Strand 4
C
120 125parallel
Strand 5
C
166 169parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 57first strand
Strand 2
C
40 41parallel
Strand 3
C
81 86anti-parallel
Strand 4
C
72 78anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 36first strand
Strand 2
D
100 103parallel
Strand 3
D
8 12parallel
Strand 4
D
120 125parallel
Strand 5
D
166 169parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 57first strand
Strand 2
D
40 41parallel
Strand 3
D
81 86anti-parallel
Strand 4
D
72 78anti-parallel
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