Analysis of interatomic Contacts of Structural Units in PDB entry:
2J4D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J4D entry

There are 2 chains in PDB entry 2J4D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2GLY 497
B
 ASP 2PRO 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 2J4D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 27Right-handed alpha
Helix 2
2
A
55 64Right-handed alpha
Helix 3
3
A
75 80Right-handed 310
Helix 4
4
A
91 112Right-handed alpha
Helix 5
5
A
122 135Right-handed alpha
Helix 6
6
A
146 162Right-handed alpha
Helix 7
7
A
179 183Right-handed 310
Helix 8
8
A
186 190Right-handed 310
Helix 9
9
A
193 205Right-handed alpha
Helix 10
10
A
251 264Right-handed alpha
Helix 11
11
A
268 270Right-handed 310
Helix 12
12
A
271 276Right-handed alpha
Helix 13
13
A
288 294Right-handed alpha
Helix 14
14
A
298 313Right-handed alpha
Helix 15
15
A
316 340Right-handed alpha
Helix 16
16
A
341 344Right-handed 310
Helix 17
17
A
359 368Right-handed alpha
Helix 18
18
A
373 387Right-handed alpha
Helix 19
19
A
390 404Right-handed alpha
Helix 20
20
A
408 420Right-handed alpha
Helix 21
21
A
424 436Right-handed alpha
Helix 22
22
A
441 445Right-handed 310
Helix 23
23
A
449 458Right-handed alpha
Helix 24
24
A
461 468Right-handed alpha
Helix 25
25
A
469 472Right-handed 310
Helix 26
26
A
482 487Right-handed alpha
Helix 27
27
B
11 27Right-handed alpha
Helix 28
28
B
55 64Right-handed alpha
Helix 29
29
B
75 80Right-handed 310
Helix 30
30
B
91 112Right-handed alpha
Helix 31
31
B
122 135Right-handed alpha
Helix 32
32
B
146 162Right-handed alpha
Helix 33
33
B
179 183Right-handed 310
Helix 34
34
B
186 190Right-handed 310
Helix 35
35
B
193 205Right-handed alpha
Helix 36
36
B
251 264Right-handed alpha
Helix 37
37
B
268 270Right-handed 310
Helix 38
38
B
271 276Right-handed alpha
Helix 39
39
B
288 294Right-handed alpha
Helix 40
40
B
298 313Right-handed alpha
Helix 41
41
B
316 340Right-handed alpha
Helix 42
42
B
341 344Right-handed 310
Helix 43
43
B
359 368Right-handed alpha
Helix 44
44
B
373 387Right-handed alpha
Helix 45
45
B
390 404Right-handed alpha
Helix 46
46
B
408 420Right-handed alpha
Helix 47
47
B
424 436Right-handed alpha
Helix 48
48
B
449 458Right-handed alpha
Helix 49
49
B
461 468Right-handed alpha
Helix 50
50
B
469 472Right-handed 310
Helix 51
51
B
475 480Right-handed alpha
Helix 52
52
B
482 487Right-handed alpha
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There are 4 sheets in PDB entry 2J4D. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
245 248parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 120first strand
Strand 2
A
67 74parallel
Strand 3
A
41 46parallel
Strand 4
A
138 142parallel
Strand 5
A
168 172parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
245 248parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 120first strand
Strand 2
B
67 74parallel
Strand 3
B
41 46parallel
Strand 4
B
138 142parallel
Strand 5
B
168 172parallel
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