Analysis of interatomic Contacts of Structural Units in PDB entry:
2J4E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J4E entry

There are 8 chains in PDB entry 2J4E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLY 190
B
 SER 0ALA 193
C
 SER 0ALA 193
D
 SER 0ALA 194
E
 SER 0PHE 189
F
 SER 0ALA 193
G
 SER 0GLY 190
H
 ALA 3GLY 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 2J4E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 26Right-handed alpha
Helix 2
2
A
48 65Right-handed alpha
Helix 3
3
A
79 81Right-handed 310
Helix 4
4
A
87 103Right-handed alpha
Helix 5
5
A
151 153Right-handed 310
Helix 6
6
A
168 176Right-handed alpha
Helix 7
7
A
176 189Right-handed alpha
Helix 8
8
B
0 6Right-handed alpha
Helix 9
9
B
16 27Right-handed alpha
Helix 10
10
B
48 65Right-handed alpha
Helix 11
11
B
87 103Right-handed alpha
Helix 12
12
B
151 153Right-handed 310
Helix 13
13
B
168 176Right-handed alpha
Helix 14
14
B
176 189Right-handed alpha
Helix 15
15
C
1 6Right-handed alpha
Helix 16
16
C
16 28Right-handed alpha
Helix 17
17
C
48 65Right-handed alpha
Helix 18
18
C
79 81Right-handed 310
Helix 19
19
C
87 103Right-handed alpha
Helix 20
20
C
151 153Right-handed 310
Helix 21
21
C
168 176Right-handed alpha
Helix 22
22
C
176 189Right-handed alpha
Helix 23
23
D
0 6Right-handed alpha
Helix 24
24
D
16 27Right-handed alpha
Helix 25
25
D
48 65Right-handed alpha
Helix 26
26
D
87 104Right-handed alpha
Helix 27
27
D
151 153Right-handed 310
Helix 28
28
D
168 176Right-handed alpha
Helix 29
29
D
176 191Right-handed alpha
Helix 30
30
E
0 6Right-handed alpha
Helix 31
31
E
16 27Right-handed alpha
Helix 32
32
E
48 65Right-handed alpha
Helix 33
33
E
79 81Right-handed 310
Helix 34
34
E
87 103Right-handed alpha
Helix 35
35
E
151 153Right-handed 310
Helix 36
36
E
168 173Right-handed alpha
Helix 37
37
E
176 189Right-handed alpha
Helix 38
38
F
0 6Right-handed alpha
Helix 39
39
F
16 27Right-handed alpha
Helix 40
40
F
48 65Right-handed alpha
Helix 41
41
F
79 81Right-handed 310
Helix 42
42
F
87 103Right-handed alpha
Helix 43
43
F
151 153Right-handed 310
Helix 44
44
F
168 173Right-handed alpha
Helix 45
45
F
176 189Right-handed alpha
Helix 46
46
G
1 6Right-handed alpha
Helix 47
47
G
16 27Right-handed alpha
Helix 48
48
G
48 65Right-handed alpha
Helix 49
49
G
87 103Right-handed alpha
Helix 50
50
G
151 153Right-handed 310
Helix 51
51
G
163 167Right-handed 310
Helix 52
52
G
168 176Right-handed alpha
Helix 53
53
G
176 189Right-handed alpha
Helix 54
54
H
16 28Right-handed alpha
Helix 55
55
H
48 65Right-handed alpha
Helix 56
56
H
87 103Right-handed alpha
Helix 57
57
H
151 153Right-handed 310
Helix 58
58
H
168 176Right-handed alpha
Helix 59
59
H
176 189Right-handed alpha
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There are 11 sheets in PDB entry 2J4E. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, EA, FA, GA, HA,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
9 13parallel
Strand 3
A
68 77parallel
Strand 4
A
111 121anti-parallel
Strand 5
A
130 140anti-parallel
Strand 6
A
155 157anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
9 13parallel
Strand 3
A
68 77parallel
Strand 4
A
84 85anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
9 13parallel
Strand 3
B
68 77parallel
Strand 4
B
111 121anti-parallel
Strand 5
B
130 140anti-parallel
Strand 6
B
155 157anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
9 13parallel
Strand 3
B
68 77parallel
Strand 4
B
83 85anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 38first strand
Strand 2
C
9 13parallel
Strand 3
C
68 77parallel
Strand 4
C
111 121anti-parallel
Strand 5
C
130 140anti-parallel
Strand 6
C
155 157anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 38first strand
Strand 2
C
9 13parallel
Strand 3
C
68 77parallel
Strand 4
C
84 85anti-parallel
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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 38first strand
Strand 2
D
9 13parallel
Strand 3
D
68 77parallel
Strand 4
D
84 85anti-parallel
Strand 5
D
68 77anti-parallel
Strand 6
D
155 157first strand
Strand 7
D
130 140anti-parallel
Strand 8
D
111 121anti-parallel
Strand 9
D
68 77anti-parallel
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There are 9 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
34 38first strand
Strand 2
E
9 13parallel
Strand 3
E
68 77parallel
Strand 4
E
84 85anti-parallel
Strand 5
E
68 77anti-parallel
Strand 6
E
155 157first strand
Strand 7
E
130 140anti-parallel
Strand 8
E
111 121anti-parallel
Strand 9
E
68 77anti-parallel
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There are 9 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
34 38first strand
Strand 2
F
9 13parallel
Strand 3
F
68 77parallel
Strand 4
F
84 85anti-parallel
Strand 5
F
68 77anti-parallel
Strand 6
F
155 157first strand
Strand 7
F
130 140anti-parallel
Strand 8
F
111 121anti-parallel
Strand 9
F
68 77anti-parallel
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There are 9 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
34 38first strand
Strand 2
G
9 13parallel
Strand 3
G
68 77parallel
Strand 4
G
84 85anti-parallel
Strand 5
G
68 77anti-parallel
Strand 6
G
155 157first strand
Strand 7
G
130 140anti-parallel
Strand 8
G
111 121anti-parallel
Strand 9
G
68 77anti-parallel
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There are 9 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
34 38first strand
Strand 2
H
9 13parallel
Strand 3
H
68 77parallel
Strand 4
H
83 85anti-parallel
Strand 5
H
68 77anti-parallel
Strand 6
H
155 157first strand
Strand 7
H
130 140anti-parallel
Strand 8
H
111 121anti-parallel
Strand 9
H
68 77anti-parallel
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