Analysis of interatomic Contacts of Structural Units in PDB entry:
2J4J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2J4J entry

There are 6 chains in PDB entry 2J4J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 226
B	MET 1	VAL 226
C	MET 1	VAL 226
D	MET 1	VAL 226
E	MET 1	VAL 226
F	MET 1	VAL 226

There are 60 helices in PDB entry 2J4J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	14	Right-handed alpha
Helix 2	2	A	16	33	Right-handed alpha
Helix 3	3	A	43	57	Right-handed alpha
Helix 4	4	A	60	84	Right-handed alpha
Helix 5	5	A	94	103	Right-handed alpha
Helix 6	6	A	118	130	Right-handed alpha
Helix 7	7	A	163	171	Right-handed alpha
Helix 8	8	A	185	195	Right-handed alpha
Helix 9	9	A	205	208	Right-handed 310
Helix 10	10	A	209	215	Right-handed alpha
Helix 11	11	B	9	14	Right-handed alpha
Helix 12	12	B	16	33	Right-handed alpha
Helix 13	13	B	43	57	Right-handed alpha
Helix 14	14	B	60	84	Right-handed alpha
Helix 15	15	B	94	103	Right-handed alpha
Helix 16	16	B	118	130	Right-handed alpha
Helix 17	17	B	163	171	Right-handed alpha
Helix 18	18	B	185	195	Right-handed alpha
Helix 19	19	B	205	208	Right-handed 310
Helix 20	20	B	209	216	Right-handed alpha
Helix 21	21	C	9	14	Right-handed alpha
Helix 22	22	C	16	33	Right-handed alpha
Helix 23	23	C	43	57	Right-handed alpha
Helix 24	24	C	60	84	Right-handed alpha
Helix 25	25	C	94	103	Right-handed alpha
Helix 26	26	C	118	130	Right-handed alpha
Helix 27	27	C	163	171	Right-handed alpha
Helix 28	28	C	185	195	Right-handed alpha
Helix 29	29	C	205	208	Right-handed 310
Helix 30	30	C	209	215	Right-handed alpha
Helix 31	31	D	9	14	Right-handed alpha
Helix 32	32	D	16	33	Right-handed alpha
Helix 33	33	D	43	57	Right-handed alpha
Helix 34	34	D	60	84	Right-handed alpha
Helix 35	35	D	94	103	Right-handed alpha
Helix 36	36	D	118	130	Right-handed alpha
Helix 37	37	D	163	171	Right-handed alpha
Helix 38	38	D	185	195	Right-handed alpha
Helix 39	39	D	205	208	Right-handed 310
Helix 40	40	D	209	215	Right-handed alpha
Helix 41	41	E	9	14	Right-handed alpha
Helix 42	42	E	16	33	Right-handed alpha
Helix 43	43	E	43	57	Right-handed alpha
Helix 44	44	E	60	84	Right-handed alpha
Helix 45	45	E	94	103	Right-handed alpha
Helix 46	46	E	118	130	Right-handed alpha
Helix 47	47	E	163	171	Right-handed alpha
Helix 48	48	E	185	196	Right-handed alpha
Helix 49	49	E	205	208	Right-handed 310
Helix 50	50	E	209	216	Right-handed alpha
Helix 51	51	F	9	14	Right-handed alpha
Helix 52	52	F	16	33	Right-handed alpha
Helix 53	53	F	43	57	Right-handed alpha
Helix 54	54	F	60	84	Right-handed alpha
Helix 55	55	F	94	103	Right-handed alpha
Helix 56	56	F	118	130	Right-handed alpha
Helix 57	57	F	163	171	Right-handed alpha
Helix 58	58	F	185	195	Right-handed alpha
Helix 59	59	F	205	208	Right-handed 310
Helix 60	60	F	209	215	Right-handed alpha

There are 10 sheets in PDB entry 2J4J. Click on sheet of interest to get list of strands forming it: AA, BA, CA, CB, A, DB, EA, EB, FA, FB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	110	first strand
Strand 2	A	36	41	parallel
Strand 3	A	2	7	parallel
Strand 4	A	134	139	parallel
Strand 5	A	198	203	parallel
Strand 6	A	221	224	anti-parallel
Strand 7	A	160	162	parallel

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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	110	first strand
Strand 2	B	36	41	parallel
Strand 3	B	2	7	parallel
Strand 4	B	134	139	parallel
Strand 5	B	198	203	parallel
Strand 6	B	221	224	anti-parallel
Strand 7	B	160	162	parallel

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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	110	first strand
Strand 2	C	36	41	parallel
Strand 3	C	2	7	parallel
Strand 4	C	134	139	parallel
Strand 5	C	198	203	parallel
Strand 6	C	221	224	anti-parallel
Strand 7	C	160	162	parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	157	158	anti-parallel

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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	110	first strand
Strand 2	D	36	41	parallel
Strand 3	D	2	7	parallel
Strand 4	D	134	139	parallel
Strand 5	D	198	203	parallel
Strand 6	D	221	224	anti-parallel
Strand 7	D	160	162	parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	157	158	anti-parallel

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There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	110	first strand
Strand 2	E	36	41	parallel
Strand 3	E	2	7	parallel
Strand 4	E	134	139	parallel
Strand 5	E	198	203	parallel
Strand 6	E	221	224	anti-parallel
Strand 7	E	160	162	parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	145	first strand
Strand 2	E	157	158	anti-parallel

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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	108	110	first strand
Strand 2	F	36	41	parallel
Strand 3	F	2	7	parallel
Strand 4	F	134	139	parallel
Strand 5	F	198	203	parallel
Strand 6	F	221	224	anti-parallel
Strand 7	F	160	162	parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	145	first strand
Strand 2	F	157	158	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2J4J

Analysis of interatomic Contacts of Structural Units in PDB entry:
2J4J