Analysis of interatomic Contacts of Structural Units in PDB entry:
2J4L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J4L entry

There are 12 chains in PDB entry 2J4L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 226
B
 MET 1VAL 226
C
 MET 1VAL 226
D
 MET 1VAL 226
E
 MET 1VAL 226
F
 MET 1VAL 226
G
 MET 1VAL 226
H
 MET 1VAL 226
I
 MET 1VAL 226
J
 MET 1VAL 226
K
 MET 1VAL 226
L
 MET 1VAL 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are116 helices in PDB entry 2J4L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 14Right-handed alpha
Helix 2
2
A
16 32Right-handed alpha
Helix 3
3
A
43 57Right-handed alpha
Helix 4
4
A
60 84Right-handed alpha
Helix 5
5
A
94 103Right-handed alpha
Helix 6
6
A
118 130Right-handed alpha
Helix 7
7
A
163 168Right-handed alpha
Helix 8
8
A
185 195Right-handed alpha
Helix 9
9
A
205 207Right-handed 310
Helix 10
10
A
209 215Right-handed alpha
Helix 11
11
B
9 14Right-handed alpha
Helix 12
12
B
16 33Right-handed alpha
Helix 13
13
B
43 57Right-handed alpha
Helix 14
14
B
60 84Right-handed alpha
Helix 15
15
B
94 104Right-handed alpha
Helix 16
16
B
118 130Right-handed alpha
Helix 17
17
B
163 168Right-handed alpha
Helix 18
18
B
185 195Right-handed alpha
Helix 19
19
B
205 208Right-handed 310
Helix 20
20
B
209 215Right-handed alpha
Helix 21
21
C
9 14Right-handed alpha
Helix 22
22
C
43 57Right-handed alpha
Helix 23
23
C
60 84Right-handed alpha
Helix 24
24
C
94 103Right-handed alpha
Helix 25
25
C
118 130Right-handed alpha
Helix 26
26
C
163 170Right-handed alpha
Helix 27
27
C
185 195Right-handed alpha
Helix 28
28
C
205 208Right-handed 310
Helix 29
29
C
209 216Right-handed alpha
Helix 30
30
D
9 14Right-handed alpha
Helix 31
31
D
17 32Right-handed alpha
Helix 32
32
D
43 57Right-handed alpha
Helix 33
33
D
60 84Right-handed alpha
Helix 34
34
D
94 103Right-handed alpha
Helix 35
35
D
118 130Right-handed alpha
Helix 36
36
D
163 168Right-handed alpha
Helix 37
37
D
185 195Right-handed alpha
Helix 38
38
D
205 208Right-handed 310
Helix 39
39
D
209 215Right-handed alpha
Helix 40
40
E
9 14Right-handed alpha
Helix 41
41
E
16 32Right-handed alpha
Helix 42
42
E
43 57Right-handed alpha
Helix 43
43
E
60 83Right-handed alpha
Helix 44
44
E
84 86Right-handed 310
Helix 45
45
E
94 104Right-handed alpha
Helix 46
46
E
118 130Right-handed alpha
Helix 47
47
E
163 170Right-handed alpha
Helix 48
48
E
185 195Right-handed alpha
Helix 49
49
E
205 208Right-handed 310
Helix 50
50
E
209 215Right-handed alpha
Helix 51
51
F
9 14Right-handed alpha
Helix 52
52
F
17 32Right-handed alpha
Helix 53
53
F
43 57Right-handed alpha
Helix 54
54
F
60 84Right-handed alpha
Helix 55
55
F
94 103Right-handed alpha
Helix 56
56
F
118 130Right-handed alpha
Helix 57
57
F
163 170Right-handed alpha
Helix 58
58
F
185 195Right-handed alpha
Helix 59
59
F
205 208Right-handed 310
Helix 60
60
F
209 215Right-handed alpha
Helix 61
61
G
9 13Right-handed 310
Helix 62
62
G
17 32Right-handed alpha
Helix 63
63
G
43 56Right-handed alpha
Helix 64
64
G
60 83Right-handed alpha
Helix 65
65
G
94 104Right-handed alpha
Helix 66
66
G
118 130Right-handed alpha
Helix 67
67
G
163 170Right-handed alpha
Helix 68
68
G
185 195Right-handed alpha
Helix 69
69
G
205 208Right-handed 310
Helix 70
70
G
209 216Right-handed alpha
Helix 71
71
H
9 13Right-handed 310
Helix 72
72
H
43 57Right-handed alpha
Helix 73
73
H
60 84Right-handed alpha
Helix 74
74
H
94 104Right-handed alpha
Helix 75
75
H
118 130Right-handed alpha
Helix 76
76
H
185 195Right-handed alpha
Helix 77
77
H
205 208Right-handed 310
Helix 78
78
H
209 216Right-handed alpha
Helix 79
79
I
9 13Right-handed 310
Helix 80
80
I
43 57Right-handed alpha
Helix 81
81
I
60 84Right-handed alpha
Helix 82
82
I
94 104Right-handed alpha
Helix 83
83
I
118 130Right-handed alpha
Helix 84
84
I
163 169Right-handed alpha
Helix 85
85
I
185 195Right-handed alpha
Helix 86
86
I
205 208Right-handed 310
Helix 87
87
I
209 216Right-handed alpha
Helix 88
88
J
9 13Right-handed 310
Helix 89
89
J
17 32Right-handed alpha
Helix 90
90
J
43 56Right-handed alpha
Helix 91
91
J
60 84Right-handed alpha
Helix 92
92
J
94 104Right-handed alpha
Helix 93
93
J
118 130Right-handed alpha
Helix 94
94
J
163 168Right-handed alpha
Helix 95
95
J
185 195Right-handed alpha
Helix 96
96
J
205 208Right-handed 310
Helix 97
97
J
209 216Right-handed alpha
Helix 98
98
K
9 13Right-handed 310
Helix 99
99
K
43 56Right-handed alpha
Helix 100
100
K
60 84Right-handed alpha
Helix 101
101
K
94 104Right-handed alpha
Helix 102
102
K
118 130Right-handed alpha
Helix 103
103
K
163 169Right-handed alpha
Helix 104
104
K
185 195Right-handed alpha
Helix 105
105
K
205 208Right-handed 310
Helix 106
106
K
209 216Right-handed alpha
Helix 107
107
L
9 13Right-handed 310
Helix 108
108
L
16 32Right-handed alpha
Helix 109
109
L
43 56Right-handed alpha
Helix 110
110
L
60 84Right-handed alpha
Helix 111
111
L
94 104Right-handed alpha
Helix 112
112
L
118 130Right-handed alpha
Helix 113
113
L
163 170Right-handed alpha
Helix 114
114
L
185 195Right-handed alpha
Helix 115
115
L
205 208Right-handed 310
Helix 116
116
L
209 216Right-handed alpha
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There are 16 sheets in PDB entry 2J4L. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, FB, GA, GB, HA, IA, JA, JB, KA, LA, LB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
36 41parallel
Strand 3
A
2 7parallel
Strand 4
A
134 139parallel
Strand 5
A
198 203parallel
Strand 6
A
221 224anti-parallel
Strand 7
A
160 162parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 110first strand
Strand 2
B
36 41parallel
Strand 3
B
2 7parallel
Strand 4
B
134 139parallel
Strand 5
B
198 203parallel
Strand 6
B
221 224anti-parallel
Strand 7
B
160 162parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
108 110first strand
Strand 2
C
36 41parallel
Strand 3
C
2 7parallel
Strand 4
C
134 139parallel
Strand 5
C
198 203parallel
Strand 6
C
221 224anti-parallel
Strand 7
C
160 162parallel
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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
108 110first strand
Strand 2
D
36 41parallel
Strand 3
D
2 7parallel
Strand 4
D
134 139parallel
Strand 5
D
198 203parallel
Strand 6
D
221 224anti-parallel
Strand 7
D
160 162parallel
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There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
108 110first strand
Strand 2
E
36 41parallel
Strand 3
E
2 7parallel
Strand 4
E
134 139parallel
Strand 5
E
198 203parallel
Strand 6
E
221 224anti-parallel
Strand 7
E
160 162parallel
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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
108 110first strand
Strand 2
F
36 41parallel
Strand 3
F
2 7parallel
Strand 4
F
134 139parallel
Strand 5
F
198 203parallel
Strand 6
F
221 224anti-parallel
Strand 7
F
160 162parallel
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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
144 145first strand
Strand 2
F
157 158anti-parallel
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There are 7 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
108 110first strand
Strand 2
G
36 41parallel
Strand 3
G
2 7parallel
Strand 4
G
134 139parallel
Strand 5
G
198 203parallel
Strand 6
G
221 224anti-parallel
Strand 7
G
160 162parallel
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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
144 145first strand
Strand 2
G
157 158anti-parallel
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There are 7 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
108 110first strand
Strand 2
H
38 41parallel
Strand 3
H
3 7parallel
Strand 4
H
134 139parallel
Strand 5
H
198 203parallel
Strand 6
H
221 223anti-parallel
Strand 7
H
160 161parallel
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There are 7 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
108 110first strand
Strand 2
I
36 41parallel
Strand 3
I
2 7parallel
Strand 4
I
134 139parallel
Strand 5
I
198 203parallel
Strand 6
I
221 224anti-parallel
Strand 7
I
160 162parallel
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There are 7 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
108 110first strand
Strand 2
J
36 41parallel
Strand 3
J
2 7parallel
Strand 4
J
134 139parallel
Strand 5
J
198 203parallel
Strand 6
J
221 224anti-parallel
Strand 7
J
160 162parallel
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There are 2 strands in JB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
144 145first strand
Strand 2
J
157 158anti-parallel
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There are 7 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
108 110first strand
Strand 2
K
37 41parallel
Strand 3
K
2 7parallel
Strand 4
K
132 139parallel
Strand 5
K
198 203parallel
Strand 6
K
221 224anti-parallel
Strand 7
K
160 162parallel
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There are 7 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
108 110first strand
Strand 2
L
36 41parallel
Strand 3
L
2 7parallel
Strand 4
L
134 139parallel
Strand 5
L
198 203parallel
Strand 6
L
221 224anti-parallel
Strand 7
L
160 162parallel
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There are 2 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
144 145first strand
Strand 2
L
157 158anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il