Analysis of interatomic Contacts of Structural Units in PDB entry:
2J4Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J4Y entry

There are 2 chains in PDB entry 2J4Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 327
B
 MET 1PRO 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 2J4Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 47Right-handed alpha
Helix 2
2
A
47 52Right-handed alpha
Helix 3
3
A
52 57Right-handed alpha
Helix 4
4
A
57 65Right-handed alpha
Helix 5
5
A
70 76Right-handed alpha
Helix 6
6
A
78 83Right-handed alpha
Helix 7
7
A
83 88Right-handed alpha
Helix 8
8
A
91 99Right-handed alpha
Helix 9
9
A
111 126Right-handed alpha
Helix 10
10
A
128 140Right-handed alpha
Helix 11
11
A
149 169Right-handed alpha
Helix 12
12
A
170 173Right-handed 310
Helix 13
13
A
199 211Right-handed alpha
Helix 14
14
A
212 225Right-handed alpha
Helix 15
15
A
248 278Right-handed alpha
Helix 16
16
A
288 296Right-handed alpha
Helix 17
17
A
300 309Right-handed alpha
Helix 18
18
A
310 322Right-handed alpha
Helix 19
19
B
35 47Right-handed alpha
Helix 20
20
B
47 52Right-handed alpha
Helix 21
21
B
52 57Right-handed alpha
Helix 22
22
B
57 65Right-handed alpha
Helix 23
23
B
70 76Right-handed alpha
Helix 24
24
B
78 88Right-handed alpha
Helix 25
25
B
91 99Right-handed alpha
Helix 26
26
B
111 126Right-handed alpha
Helix 27
27
B
128 140Right-handed alpha
Helix 28
28
B
149 169Right-handed alpha
Helix 29
29
B
169 174Right-handed alpha
Helix 30
30
B
199 211Right-handed alpha
Helix 31
31
B
212 225Right-handed alpha
Helix 32
32
B
246 265Right-handed alpha
Helix 33
33
B
265 278Right-handed alpha
Helix 34
34
B
288 296Right-handed alpha
Helix 35
35
B
300 308Right-handed alpha
Helix 36
36
B
310 322Right-handed alpha
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There are 2 sheets in PDB entry 2J4Y. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
Strand 2
A
187 189anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 180first strand
Strand 2
B
187 189anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il