Analysis of interatomic Contacts of Structural Units in PDB entry:
2J57

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2J57 entry

There are 16 chains in PDB entry 2J57 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	GLU 105
B	ASP 1	GLU 105
C	ASP 1	GLU 105
D	ASP 1	GLU 105
G	GLU 5	GLY 386
H	GLU 5	GLY 386
I	GLU 5	GLY 386
J	GLU 5	GLY 386
K	THR 7	SER 56
K	VAL 58	SER 131
L	THR 7	SER 56
L	VAL 58	SER 131
M	THR 7	SER 56
M	VAL 58	SER 131
N	THR 7	SER 56
N	VAL 58	SER 131

There are 24 helices in PDB entry 2J57. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	G	8	29	Right-handed alpha
Helix 2	2	G	269	275	Right-handed alpha
Helix 3	3	H	8	29	Right-handed alpha
Helix 4	4	H	269	275	Right-handed alpha
Helix 5	5	I	8	29	Right-handed alpha
Helix 6	6	I	269	275	Right-handed alpha
Helix 7	7	J	8	29	Right-handed alpha
Helix 8	8	J	269	275	Right-handed alpha
Helix 9	9	K	26	29	Right-handed 310
Helix 10	10	K	36	40	Right-handed 310
Helix 11	11	K	99	103	Right-handed 310
Helix 12	12	K	112	116	Right-handed 310
Helix 13	13	L	26	29	Right-handed 310
Helix 14	14	L	36	40	Right-handed 310
Helix 15	15	L	99	103	Right-handed 310
Helix 16	16	L	112	116	Right-handed 310
Helix 17	17	M	26	29	Right-handed 310
Helix 18	18	M	36	40	Right-handed 310
Helix 19	19	M	99	103	Right-handed 310
Helix 20	20	M	112	116	Right-handed 310
Helix 21	21	N	26	29	Right-handed 310
Helix 22	22	N	36	40	Right-handed 310
Helix 23	23	N	99	103	Right-handed 310
Helix 24	24	N	112	116	Right-handed 310

There are 55 sheets in PDB entry 2J57. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, GA, GB, GC, GD, GE, GF, GG, HA, HB, HC, HD, HE, HF, HG, IA, IB, IC, ID, IE, IF, IG, JA, JB, JC, JD, JE, JF, JG, KA, KB, KC, LA, LB, LC, MA, MB, MC, NA, NB, NC,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	76	82	anti-parallel
Strand 3	A	11	12	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	76	82	anti-parallel
Strand 3	A	42	47	anti-parallel
Strand 4	A	21	26	parallel
Strand 5	A	29	30	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	37	first strand
Strand 2	A	95	104	parallel
Strand 3	A	86	92	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	67	68	anti-parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	76	82	anti-parallel
Strand 3	B	11	12	anti-parallel

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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	76	82	anti-parallel
Strand 3	B	42	47	anti-parallel
Strand 4	B	21	26	parallel
Strand 5	B	29	30	anti-parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	37	first strand
Strand 2	B	95	104	parallel
Strand 3	B	86	92	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	67	68	anti-parallel

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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	76	82	anti-parallel
Strand 3	C	11	12	anti-parallel

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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	76	82	anti-parallel
Strand 3	C	42	47	anti-parallel
Strand 4	C	21	26	parallel
Strand 5	C	29	30	anti-parallel

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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	37	first strand
Strand 2	C	95	104	parallel
Strand 3	C	86	92	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	57	first strand
Strand 2	C	67	68	anti-parallel

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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	4	first strand
Strand 2	D	76	82	anti-parallel
Strand 3	D	11	12	anti-parallel
Strand 4	D	76	82	anti-parallel
Strand 5	D	29	30	first strand
Strand 6	D	21	26	anti-parallel
Strand 7	D	42	47	parallel
Strand 8	D	76	82	anti-parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	95	104	parallel
Strand 3	D	86	92	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	57	first strand
Strand 2	D	67	68	anti-parallel

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There are 4 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	70	77	first strand
Strand 2	G	59	65	anti-parallel
Strand 3	G	46	51	anti-parallel
Strand 4	G	379	381	anti-parallel

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There are 4 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	82	85	first strand
Strand 2	G	92	101	anti-parallel
Strand 3	G	104	114	anti-parallel
Strand 4	G	121	127	anti-parallel

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There are 4 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	142	144	first strand
Strand 2	G	150	155	anti-parallel
Strand 3	G	161	166	anti-parallel
Strand 4	G	171	177	anti-parallel

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There are 4 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	181	188	first strand
Strand 2	G	191	196	anti-parallel
Strand 3	G	201	205	anti-parallel
Strand 4	G	213	216	anti-parallel

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There are 7 strands in GE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	232	234	first strand
Strand 2	G	239	243	anti-parallel
Strand 3	G	248	253	anti-parallel
Strand 4	G	260	261	anti-parallel
Strand 5	G	248	253	anti-parallel
Strand 6	G	265	266	anti-parallel
Strand 7	G	248	253	anti-parallel

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There are 7 strands in GF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	277	279	first strand
Strand 2	G	293	300	anti-parallel
Strand 3	G	285	288	anti-parallel
Strand 4	G	293	300	anti-parallel
Strand 5	G	323	333	first strand
Strand 6	G	310	317	anti-parallel
Strand 7	G	293	300	anti-parallel

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There are 4 strands in GG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	335	338	first strand
Strand 2	G	345	350	anti-parallel
Strand 3	G	355	360	anti-parallel
Strand 4	G	366	370	anti-parallel

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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	70	77	first strand
Strand 2	H	59	65	anti-parallel
Strand 3	H	46	51	anti-parallel
Strand 4	H	379	382	anti-parallel

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There are 4 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	82	85	first strand
Strand 2	H	92	101	anti-parallel
Strand 3	H	104	114	anti-parallel
Strand 4	H	121	127	anti-parallel

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There are 4 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	142	144	first strand
Strand 2	H	150	155	anti-parallel
Strand 3	H	161	166	anti-parallel
Strand 4	H	171	177	anti-parallel

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There are 4 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	181	188	first strand
Strand 2	H	191	196	anti-parallel
Strand 3	H	201	205	anti-parallel
Strand 4	H	213	216	anti-parallel

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There are 7 strands in HE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	232	234	first strand
Strand 2	H	239	243	anti-parallel
Strand 3	H	248	253	anti-parallel
Strand 4	H	260	261	anti-parallel
Strand 5	H	248	253	anti-parallel
Strand 6	H	265	266	anti-parallel
Strand 7	H	248	253	anti-parallel

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There are 7 strands in HF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	277	279	first strand
Strand 2	H	293	300	anti-parallel
Strand 3	H	285	288	anti-parallel
Strand 4	H	293	300	anti-parallel
Strand 5	H	323	333	first strand
Strand 6	H	310	317	anti-parallel
Strand 7	H	293	300	anti-parallel

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There are 4 strands in HG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	335	338	first strand
Strand 2	H	345	350	anti-parallel
Strand 3	H	355	360	anti-parallel
Strand 4	H	366	370	anti-parallel

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There are 4 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	70	77	first strand
Strand 2	I	59	65	anti-parallel
Strand 3	I	46	51	anti-parallel
Strand 4	I	379	382	anti-parallel

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There are 4 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	82	85	first strand
Strand 2	I	92	101	anti-parallel
Strand 3	I	104	114	anti-parallel
Strand 4	I	121	127	anti-parallel

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There are 4 strands in IC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	142	144	first strand
Strand 2	I	150	155	anti-parallel
Strand 3	I	161	166	anti-parallel
Strand 4	I	171	177	anti-parallel

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There are 4 strands in ID sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	181	188	first strand
Strand 2	I	191	196	anti-parallel
Strand 3	I	201	205	anti-parallel
Strand 4	I	213	216	anti-parallel

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There are 4 strands in IE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	232	234	first strand
Strand 2	I	239	242	anti-parallel
Strand 3	I	250	253	anti-parallel
Strand 4	I	260	261	anti-parallel

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There are 7 strands in IF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	277	279	first strand
Strand 2	I	293	300	anti-parallel
Strand 3	I	285	288	anti-parallel
Strand 4	I	293	300	anti-parallel
Strand 5	I	323	333	first strand
Strand 6	I	310	317	anti-parallel
Strand 7	I	293	300	anti-parallel

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There are 4 strands in IG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	335	338	first strand
Strand 2	I	345	350	anti-parallel
Strand 3	I	355	360	anti-parallel
Strand 4	I	366	370	anti-parallel

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There are 4 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	70	77	first strand
Strand 2	J	59	65	anti-parallel
Strand 3	J	46	51	anti-parallel
Strand 4	J	379	382	anti-parallel

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There are 4 strands in JB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	82	85	first strand
Strand 2	J	92	101	anti-parallel
Strand 3	J	104	114	anti-parallel
Strand 4	J	121	127	anti-parallel

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There are 4 strands in JC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	142	144	first strand
Strand 2	J	150	155	anti-parallel
Strand 3	J	161	166	anti-parallel
Strand 4	J	171	177	anti-parallel

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There are 4 strands in JD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	181	188	first strand
Strand 2	J	191	196	anti-parallel
Strand 3	J	201	205	anti-parallel
Strand 4	J	213	216	anti-parallel

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There are 7 strands in JE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	232	234	first strand
Strand 2	J	239	243	anti-parallel
Strand 3	J	248	253	anti-parallel
Strand 4	J	260	261	anti-parallel
Strand 5	J	248	253	anti-parallel
Strand 6	J	265	266	anti-parallel
Strand 7	J	248	253	anti-parallel

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There are 7 strands in JF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	277	279	first strand
Strand 2	J	293	300	anti-parallel
Strand 3	J	285	288	anti-parallel
Strand 4	J	293	300	anti-parallel
Strand 5	J	323	333	first strand
Strand 6	J	310	317	anti-parallel
Strand 7	J	293	300	anti-parallel

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There are 4 strands in JG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	335	338	first strand
Strand 2	J	345	350	anti-parallel
Strand 3	J	355	360	anti-parallel
Strand 4	J	366	370	anti-parallel

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There are 2 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	32	34	first strand
Strand 2	K	87	89	anti-parallel

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There are 3 strands in KB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	51	52	first strand
Strand 2	K	76	78	anti-parallel
Strand 3	K	119	122	anti-parallel

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There are 3 strands in KC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	59	62	first strand
Strand 2	K	69	72	anti-parallel
Strand 3	K	126	128	anti-parallel

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There are 2 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	32	34	first strand
Strand 2	L	87	89	anti-parallel

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There are 3 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	51	52	first strand
Strand 2	L	76	78	anti-parallel
Strand 3	L	119	122	anti-parallel

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There are 3 strands in LC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	59	62	first strand
Strand 2	L	69	72	anti-parallel
Strand 3	L	126	129	anti-parallel

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There are 2 strands in MA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	32	34	first strand
Strand 2	M	87	89	anti-parallel

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There are 3 strands in MB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	51	52	first strand
Strand 2	M	76	78	anti-parallel
Strand 3	M	119	122	anti-parallel

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There are 3 strands in MC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	59	62	first strand
Strand 2	M	69	72	anti-parallel
Strand 3	M	126	129	anti-parallel

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There are 2 strands in NA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	32	34	first strand
Strand 2	N	87	89	anti-parallel

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There are 3 strands in NB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	51	52	first strand
Strand 2	N	76	78	anti-parallel
Strand 3	N	119	122	anti-parallel

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There are 3 strands in NC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	59	62	first strand
Strand 2	N	69	72	anti-parallel
Strand 3	N	126	129	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2J57

Analysis of interatomic Contacts of Structural Units in PDB entry:
2J57