Analysis of interatomic Contacts of Structural Units in PDB entry:
2J59

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2J59 entry

There are 12 chains in PDB entry 2J59 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 16	GLN 180
B	GLY 16	GLN 180
C	GLY 16	GLN 180
D	GLY 16	GLN 180
E	GLY 16	GLN 180
F	GLY 16	GLN 180
M	ALA 931	LEU 1063
N	ALA 931	LEU 1063
O	ALA 931	ASN 1061
P	ALA 931	LEU 1063
Q	ALA 931	LEU 1063
R	ALA 931	LEU 1063

There are 59 helices in PDB entry 2J59. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	29	40	Right-handed alpha
Helix 2	2	A	71	82	Right-handed 310
Helix 3	3	A	99	112	Right-handed alpha
Helix 4	4	A	113	117	Right-handed 310
Helix 5	5	A	135	144	Right-handed alpha
Helix 6	6	A	145	148	Right-handed 310
Helix 7	7	A	165	179	Right-handed alpha
Helix 8	8	B	29	40	Right-handed alpha
Helix 9	9	B	71	82	Right-handed 310
Helix 10	10	B	96	98	Right-handed 310
Helix 11	11	B	99	111	Right-handed alpha
Helix 12	12	B	112	117	Right-handed 310
Helix 13	13	B	135	143	Right-handed alpha
Helix 14	14	B	144	148	Right-handed 310
Helix 15	15	B	165	180	Right-handed alpha
Helix 16	16	C	29	40	Right-handed alpha
Helix 17	17	C	71	82	Right-handed 310
Helix 18	18	C	99	112	Right-handed alpha
Helix 19	19	C	113	117	Right-handed 310
Helix 20	20	C	135	143	Right-handed alpha
Helix 21	21	C	144	148	Right-handed 310
Helix 22	22	C	165	179	Right-handed alpha
Helix 23	23	D	29	40	Right-handed alpha
Helix 24	24	D	71	82	Right-handed 310
Helix 25	25	D	96	98	Right-handed 310
Helix 26	26	D	99	112	Right-handed alpha
Helix 27	27	D	113	117	Right-handed 310
Helix 28	28	D	135	144	Right-handed alpha
Helix 29	29	D	145	148	Right-handed 310
Helix 30	30	D	165	180	Right-handed alpha
Helix 31	31	E	29	40	Right-handed alpha
Helix 32	32	E	71	82	Right-handed 310
Helix 33	33	E	96	98	Right-handed 310
Helix 34	34	E	99	112	Right-handed alpha
Helix 35	35	E	113	117	Right-handed 310
Helix 36	36	E	135	143	Right-handed alpha
Helix 37	37	E	144	148	Right-handed 310
Helix 38	38	E	165	179	Right-handed alpha
Helix 39	39	F	29	40	Right-handed alpha
Helix 40	40	F	71	82	Right-handed 310
Helix 41	41	F	99	112	Right-handed alpha
Helix 42	42	F	113	117	Right-handed 310
Helix 43	43	F	135	143	Right-handed alpha
Helix 44	44	F	144	148	Right-handed 310
Helix 45	45	F	165	179	Right-handed alpha
Helix 46	46	M	1023	1038	Right-handed alpha
Helix 47	47	M	1041	1063	Right-handed alpha
Helix 48	48	N	1023	1037	Right-handed alpha
Helix 49	49	N	1041	1063	Right-handed alpha
Helix 50	50	O	1023	1037	Right-handed alpha
Helix 51	51	O	1041	1061	Right-handed alpha
Helix 52	52	P	974	978	Right-handed 310
Helix 53	53	P	1023	1037	Right-handed alpha
Helix 54	54	P	1041	1062	Right-handed alpha
Helix 55	55	Q	974	978	Right-handed 310
Helix 56	56	Q	1023	1037	Right-handed alpha
Helix 57	57	Q	1041	1063	Right-handed alpha
Helix 58	58	R	1023	1038	Right-handed alpha
Helix 59	59	R	1041	1063	Right-handed alpha

There are 12 sheets in PDB entry 2J59. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, MA, NA, OA, PA, QA, RA,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	58	first strand
Strand 2	A	61	68	anti-parallel
Strand 3	A	17	23	parallel
Strand 4	A	87	93	parallel
Strand 5	A	120	126	parallel
Strand 6	A	153	157	parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	58	first strand
Strand 2	B	61	68	anti-parallel
Strand 3	B	17	23	parallel
Strand 4	B	87	93	parallel
Strand 5	B	120	126	parallel
Strand 6	B	153	157	parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	58	first strand
Strand 2	C	61	68	anti-parallel
Strand 3	C	17	23	parallel
Strand 4	C	87	93	parallel
Strand 5	C	120	126	parallel
Strand 6	C	153	157	parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	58	first strand
Strand 2	D	61	68	anti-parallel
Strand 3	D	17	23	parallel
Strand 4	D	87	93	parallel
Strand 5	D	120	126	parallel
Strand 6	D	153	157	parallel

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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	58	first strand
Strand 2	E	61	68	anti-parallel
Strand 3	E	17	23	parallel
Strand 4	E	87	93	parallel
Strand 5	E	120	126	parallel
Strand 6	E	153	157	parallel

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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	58	first strand
Strand 2	F	61	68	anti-parallel
Strand 3	F	17	23	parallel
Strand 4	F	87	93	parallel
Strand 5	F	120	126	parallel
Strand 6	F	153	157	parallel

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There are 7 strands in MA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	988	989	first strand
Strand 2	M	968	972	anti-parallel
Strand 3	M	958	965	anti-parallel
Strand 4	M	933	943	anti-parallel
Strand 5	M	1016	1020	anti-parallel
Strand 6	M	1007	1011	anti-parallel
Strand 7	M	994	997	anti-parallel

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There are 7 strands in NA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	988	989	first strand
Strand 2	N	968	972	anti-parallel
Strand 3	N	958	965	anti-parallel
Strand 4	N	933	943	anti-parallel
Strand 5	N	1016	1020	anti-parallel
Strand 6	N	1007	1011	anti-parallel
Strand 7	N	994	997	anti-parallel

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There are 7 strands in OA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	988	989	first strand
Strand 2	O	968	972	anti-parallel
Strand 3	O	958	965	anti-parallel
Strand 4	O	933	943	anti-parallel
Strand 5	O	1016	1020	anti-parallel
Strand 6	O	1007	1011	anti-parallel
Strand 7	O	994	997	anti-parallel

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There are 7 strands in PA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	988	989	first strand
Strand 2	P	968	972	anti-parallel
Strand 3	P	958	965	anti-parallel
Strand 4	P	933	943	anti-parallel
Strand 5	P	1016	1020	anti-parallel
Strand 6	P	1007	1011	anti-parallel
Strand 7	P	994	997	anti-parallel

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There are 7 strands in QA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	988	989	first strand
Strand 2	Q	968	972	anti-parallel
Strand 3	Q	958	965	anti-parallel
Strand 4	Q	933	943	anti-parallel
Strand 5	Q	1016	1020	anti-parallel
Strand 6	Q	1007	1011	anti-parallel
Strand 7	Q	994	997	anti-parallel

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There are 7 strands in RA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	988	989	first strand
Strand 2	R	968	972	anti-parallel
Strand 3	R	958	965	anti-parallel
Strand 4	R	933	943	anti-parallel
Strand 5	R	1016	1020	anti-parallel
Strand 6	R	1007	1011	anti-parallel
Strand 7	R	994	997	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2J59

Analysis of interatomic Contacts of Structural Units in PDB entry:
2J59