Analysis of interatomic Contacts of Structural Units in PDB entry:
2J5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J5B entry

There are 2 chains in PDB entry 2J5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -3GLN 335
B
 THR -1SER 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 2J5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-3 10Right-handed alpha
Helix 2
2
A
17 28Right-handed alpha
Helix 3
3
A
44 61Right-handed alpha
Helix 4
4
A
70 77Right-handed alpha
Helix 5
5
A
78 82Right-handed 310
Helix 6
6
A
83 101Right-handed alpha
Helix 7
7
A
104 106Right-handed 310
Helix 8
8
A
113 120Right-handed alpha
Helix 9
9
A
120 140Right-handed alpha
Helix 10
10
A
160 172Right-handed alpha
Helix 11
11
A
186 200Right-handed alpha
Helix 12
12
A
227 231Right-handed 310
Helix 13
13
A
237 248Right-handed alpha
Helix 14
14
A
257 266Right-handed alpha
Helix 15
15
A
266 272Right-handed alpha
Helix 16
16
A
283 292Right-handed alpha
Helix 17
17
A
295 318Right-handed alpha
Helix 18
18
A
319 322Right-handed 310
Helix 19
19
A
323 333Right-handed alpha
Helix 20
20
B
-1 11Right-handed alpha
Helix 21
21
B
17 28Right-handed alpha
Helix 22
22
B
44 61Right-handed alpha
Helix 23
23
B
70 77Right-handed alpha
Helix 24
24
B
78 82Right-handed 310
Helix 25
25
B
83 101Right-handed alpha
Helix 26
26
B
104 106Right-handed 310
Helix 27
27
B
113 120Right-handed alpha
Helix 28
28
B
120 139Right-handed alpha
Helix 29
29
B
160 167Right-handed alpha
Helix 30
30
B
167 172Right-handed alpha
Helix 31
31
B
186 200Right-handed alpha
Helix 32
32
B
226 231Right-handed alpha
Helix 33
33
B
237 248Right-handed alpha
Helix 34
34
B
257 266Right-handed alpha
Helix 35
35
B
266 272Right-handed alpha
Helix 36
36
B
283 292Right-handed alpha
Helix 37
37
B
295 318Right-handed alpha
Helix 38
38
B
319 322Right-handed 310
Helix 39
39
B
323 333Right-handed alpha
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There are 4 sheets in PDB entry 2J5B. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
206 209anti-parallel
Strand 3
A
179 180parallel
Strand 4
A
31 37parallel
Strand 5
A
63 69parallel
Strand 6
A
108 112parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 276first strand
Strand 2
A
279 281anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 15first strand
Strand 2
B
206 209anti-parallel
Strand 3
B
179 180parallel
Strand 4
B
31 37parallel
Strand 5
B
63 69parallel
Strand 6
B
108 112parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 276first strand
Strand 2
B
279 281anti-parallel
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