Analysis of interatomic Contacts of Structural Units in PDB entry:
2J5I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2J5I entry

There are 12 chains in PDB entry 2J5I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	THR 250
B	GLY 6	THR 250
C	TYR 4	ASP 249
D	TYR 4	GLU 251
E	THR 3	THR 250
F	TYR 4	ASP 249
G	THR 3	LEU 248
H	TYR 4	THR 250
I	TYR 4	ASP 249
J	TYR 4	THR 250
K	THR 3	ASP 249
L	TYR 4	ASP 249

There are144 helices in PDB entry 2J5I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	26	30	Right-handed 310
Helix 2	2	A	34	50	Right-handed alpha
Helix 3	3	A	71	82	Right-handed alpha
Helix 4	4	A	85	99	Right-handed alpha
Helix 5	5	A	121	128	Right-handed alpha
Helix 6	6	A	142	147	Right-handed 310
Helix 7	7	A	153	162	Right-handed alpha
Helix 8	8	A	163	174	Right-handed alpha
Helix 9	9	A	179	185	Right-handed alpha
Helix 10	10	A	193	210	Right-handed alpha
Helix 11	11	A	212	227	Right-handed alpha
Helix 12	12	A	230	249	Right-handed alpha
Helix 13	13	B	26	30	Right-handed 310
Helix 14	14	B	34	50	Right-handed alpha
Helix 15	15	B	71	81	Right-handed alpha
Helix 16	16	B	84	99	Right-handed alpha
Helix 17	17	B	121	128	Right-handed alpha
Helix 18	18	B	141	147	Right-handed 310
Helix 19	19	B	153	162	Right-handed alpha
Helix 20	20	B	163	174	Right-handed alpha
Helix 21	21	B	179	185	Right-handed alpha
Helix 22	22	B	193	211	Right-handed alpha
Helix 23	23	B	212	227	Right-handed alpha
Helix 24	24	B	230	249	Right-handed alpha
Helix 25	25	C	26	30	Right-handed 310
Helix 26	26	C	34	50	Right-handed alpha
Helix 27	27	C	71	82	Right-handed alpha
Helix 28	28	C	85	99	Right-handed alpha
Helix 29	29	C	121	128	Right-handed alpha
Helix 30	30	C	142	147	Right-handed 310
Helix 31	31	C	153	162	Right-handed alpha
Helix 32	32	C	163	174	Right-handed alpha
Helix 33	33	C	179	185	Right-handed alpha
Helix 34	34	C	193	210	Right-handed alpha
Helix 35	35	C	212	227	Right-handed alpha
Helix 36	36	C	230	249	Right-handed alpha
Helix 37	37	D	26	30	Right-handed 310
Helix 38	38	D	34	50	Right-handed alpha
Helix 39	39	D	71	81	Right-handed alpha
Helix 40	40	D	85	99	Right-handed alpha
Helix 41	41	D	121	128	Right-handed alpha
Helix 42	42	D	141	147	Right-handed 310
Helix 43	43	D	153	162	Right-handed alpha
Helix 44	44	D	163	174	Right-handed alpha
Helix 45	45	D	179	185	Right-handed alpha
Helix 46	46	D	193	210	Right-handed alpha
Helix 47	47	D	212	227	Right-handed alpha
Helix 48	48	D	230	250	Right-handed alpha
Helix 49	49	E	26	30	Right-handed 310
Helix 50	50	E	34	50	Right-handed alpha
Helix 51	51	E	71	82	Right-handed alpha
Helix 52	52	E	85	99	Right-handed alpha
Helix 53	53	E	121	128	Right-handed alpha
Helix 54	54	E	141	147	Right-handed 310
Helix 55	55	E	153	162	Right-handed alpha
Helix 56	56	E	163	174	Right-handed alpha
Helix 57	57	E	179	185	Right-handed alpha
Helix 58	58	E	193	210	Right-handed alpha
Helix 59	59	E	212	227	Right-handed alpha
Helix 60	60	E	230	249	Right-handed alpha
Helix 61	61	F	26	30	Right-handed 310
Helix 62	62	F	34	50	Right-handed alpha
Helix 63	63	F	71	81	Right-handed alpha
Helix 64	64	F	85	99	Right-handed alpha
Helix 65	65	F	121	128	Right-handed alpha
Helix 66	66	F	142	147	Right-handed 310
Helix 67	67	F	153	162	Right-handed alpha
Helix 68	68	F	163	174	Right-handed alpha
Helix 69	69	F	179	185	Right-handed alpha
Helix 70	70	F	193	210	Right-handed alpha
Helix 71	71	F	212	227	Right-handed alpha
Helix 72	72	F	230	248	Right-handed alpha
Helix 73	73	G	26	30	Right-handed 310
Helix 74	74	G	34	51	Right-handed alpha
Helix 75	75	G	71	82	Right-handed alpha
Helix 76	76	G	85	99	Right-handed alpha
Helix 77	77	G	121	128	Right-handed alpha
Helix 78	78	G	142	147	Right-handed 310
Helix 79	79	G	153	162	Right-handed alpha
Helix 80	80	G	163	174	Right-handed alpha
Helix 81	81	G	179	185	Right-handed alpha
Helix 82	82	G	193	210	Right-handed alpha
Helix 83	83	G	212	227	Right-handed alpha
Helix 84	84	G	230	248	Right-handed alpha
Helix 85	85	H	26	30	Right-handed 310
Helix 86	86	H	34	50	Right-handed alpha
Helix 87	87	H	71	82	Right-handed alpha
Helix 88	88	H	83	99	Right-handed alpha
Helix 89	89	H	121	128	Right-handed alpha
Helix 90	90	H	141	147	Right-handed 310
Helix 91	91	H	153	162	Right-handed alpha
Helix 92	92	H	163	174	Right-handed alpha
Helix 93	93	H	179	185	Right-handed alpha
Helix 94	94	H	193	210	Right-handed alpha
Helix 95	95	H	212	227	Right-handed alpha
Helix 96	96	H	230	249	Right-handed alpha
Helix 97	97	I	26	30	Right-handed 310
Helix 98	98	I	34	50	Right-handed alpha
Helix 99	99	I	71	82	Right-handed alpha
Helix 100	100	I	85	99	Right-handed alpha
Helix 101	101	I	121	128	Right-handed alpha
Helix 102	102	I	141	147	Right-handed 310
Helix 103	103	I	153	162	Right-handed alpha
Helix 104	104	I	163	174	Right-handed alpha
Helix 105	105	I	179	185	Right-handed alpha
Helix 106	106	I	193	210	Right-handed alpha
Helix 107	107	I	212	227	Right-handed alpha
Helix 108	108	I	230	248	Right-handed alpha
Helix 109	109	J	26	30	Right-handed 310
Helix 110	110	J	34	50	Right-handed alpha
Helix 111	111	J	71	81	Right-handed alpha
Helix 112	112	J	84	99	Right-handed alpha
Helix 113	113	J	121	128	Right-handed alpha
Helix 114	114	J	142	147	Right-handed 310
Helix 115	115	J	153	162	Right-handed alpha
Helix 116	116	J	163	174	Right-handed alpha
Helix 117	117	J	179	185	Right-handed alpha
Helix 118	118	J	193	210	Right-handed alpha
Helix 119	119	J	212	227	Right-handed alpha
Helix 120	120	J	230	249	Right-handed alpha
Helix 121	121	K	26	30	Right-handed 310
Helix 122	122	K	34	50	Right-handed alpha
Helix 123	123	K	71	82	Right-handed alpha
Helix 124	124	K	84	99	Right-handed alpha
Helix 125	125	K	121	128	Right-handed alpha
Helix 126	126	K	141	147	Right-handed 310
Helix 127	127	K	153	162	Right-handed alpha
Helix 128	128	K	163	174	Right-handed alpha
Helix 129	129	K	179	185	Right-handed alpha
Helix 130	130	K	193	210	Right-handed alpha
Helix 131	131	K	212	227	Right-handed alpha
Helix 132	132	K	230	248	Right-handed alpha
Helix 133	133	L	26	30	Right-handed 310
Helix 134	134	L	34	50	Right-handed alpha
Helix 135	135	L	71	81	Right-handed alpha
Helix 136	136	L	85	99	Right-handed alpha
Helix 137	137	L	121	128	Right-handed alpha
Helix 138	138	L	141	147	Right-handed 310
Helix 139	139	L	153	162	Right-handed alpha
Helix 140	140	L	163	174	Right-handed alpha
Helix 141	141	L	179	185	Right-handed alpha
Helix 142	142	L	193	210	Right-handed alpha
Helix 143	143	L	212	227	Right-handed alpha
Helix 144	144	L	230	248	Right-handed alpha

There are 24 sheets in PDB entry 2J5I. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB, GA, GB, HA, HB, IA, IB, JA, JB, KA, KB, LA, LB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	16	first strand
Strand 2	A	18	24	anti-parallel
Strand 3	A	54	61	parallel
Strand 4	A	109	113	parallel
Strand 5	A	130	134	parallel
Strand 6	A	190	192	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	118	first strand
Strand 2	A	138	140	parallel
Strand 3	A	176	178	anti-parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	16	first strand
Strand 2	B	19	24	anti-parallel
Strand 3	B	56	61	parallel
Strand 4	B	109	113	parallel
Strand 5	B	130	134	parallel
Strand 6	B	190	192	parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	116	118	parallel
Strand 3	B	138	140	parallel
Strand 4	B	177	178	anti-parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	16	first strand
Strand 2	C	19	24	anti-parallel
Strand 3	C	56	61	parallel
Strand 4	C	109	113	parallel
Strand 5	C	130	134	parallel
Strand 6	C	190	192	parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	138	140	parallel
Strand 3	C	176	178	anti-parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	16	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	56	61	parallel
Strand 4	D	109	113	parallel
Strand 5	D	130	134	parallel
Strand 6	D	190	192	parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	67	first strand
Strand 2	D	116	118	parallel
Strand 3	D	138	140	parallel
Strand 4	D	177	178	anti-parallel

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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	16	first strand
Strand 2	E	19	24	anti-parallel
Strand 3	E	56	61	parallel
Strand 4	E	109	113	parallel
Strand 5	E	130	134	parallel
Strand 6	E	190	192	parallel

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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	67	first strand
Strand 2	E	116	118	parallel
Strand 3	E	138	140	parallel
Strand 4	E	177	178	anti-parallel

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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	16	first strand
Strand 2	F	19	24	anti-parallel
Strand 3	F	56	61	parallel
Strand 4	F	109	113	parallel
Strand 5	F	130	134	parallel
Strand 6	F	190	192	parallel

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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	117	118	first strand
Strand 2	F	138	140	parallel
Strand 3	F	176	178	anti-parallel

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There are 6 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	16	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	54	61	parallel
Strand 4	G	109	113	parallel
Strand 5	G	130	134	parallel
Strand 6	G	190	192	parallel

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There are 4 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	65	67	first strand
Strand 2	G	116	118	parallel
Strand 3	G	138	140	parallel
Strand 4	G	176	178	anti-parallel

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There are 6 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	16	first strand
Strand 2	H	19	24	anti-parallel
Strand 3	H	56	61	parallel
Strand 4	H	109	113	parallel
Strand 5	H	130	134	parallel
Strand 6	H	190	192	parallel

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There are 3 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	117	118	first strand
Strand 2	H	138	140	parallel
Strand 3	H	177	178	anti-parallel

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There are 6 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	16	first strand
Strand 2	I	19	24	anti-parallel
Strand 3	I	56	61	parallel
Strand 4	I	109	113	parallel
Strand 5	I	130	134	parallel
Strand 6	I	190	192	parallel

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There are 4 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	65	67	first strand
Strand 2	I	116	118	parallel
Strand 3	I	138	140	parallel
Strand 4	I	177	178	anti-parallel

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There are 6 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	16	first strand
Strand 2	J	19	24	anti-parallel
Strand 3	J	56	61	parallel
Strand 4	J	109	113	parallel
Strand 5	J	130	134	parallel
Strand 6	J	190	192	parallel

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There are 4 strands in JB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	65	67	first strand
Strand 2	J	116	118	parallel
Strand 3	J	138	140	parallel
Strand 4	J	176	178	anti-parallel

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There are 6 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	16	first strand
Strand 2	K	19	24	anti-parallel
Strand 3	K	56	61	parallel
Strand 4	K	109	113	parallel
Strand 5	K	130	134	parallel
Strand 6	K	190	192	parallel

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There are 4 strands in KB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	65	67	first strand
Strand 2	K	116	118	parallel
Strand 3	K	138	140	parallel
Strand 4	K	177	178	anti-parallel

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There are 6 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	16	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	56	61	parallel
Strand 4	L	109	113	parallel
Strand 5	L	130	134	parallel
Strand 6	L	190	192	parallel

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There are 4 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	65	67	first strand
Strand 2	L	116	118	parallel
Strand 3	L	138	140	parallel
Strand 4	L	177	178	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2J5I

Analysis of interatomic Contacts of Structural Units in PDB entry:
2J5I