Analysis of interatomic Contacts of Structural Units in PDB entry:
2J5K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2J5K entry

There are 4 chains in PDB entry 2J5K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 22	SER 330
B	THR 22	SER 330
C	THR 22	SER 330
D	THR 22	SER 330

There are 56 helices in PDB entry 2J5K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	30	43	Right-handed alpha
Helix 2	2	A	54	54	Right-handed 310
Helix 3	3	A	55	71	Right-handed alpha
Helix 4	4	A	85	89	Right-handed 310
Helix 5	5	A	108	131	Right-handed alpha
Helix 6	6	A	141	153	Right-handed alpha
Helix 7	7	A	156	158	Right-handed 310
Helix 8	8	A	164	181	Right-handed alpha
Helix 9	9	A	183	185	Right-handed 310
Helix 10	10	A	203	206	Right-handed 310
Helix 11	11	A	221	241	Right-handed alpha
Helix 12	12	A	247	263	Right-handed alpha
Helix 13	13	A	278	280	Right-handed 310
Helix 14	14	A	308	329	Right-handed alpha
Helix 15	15	B	30	43	Right-handed alpha
Helix 16	16	B	54	54	Right-handed 310
Helix 17	17	B	55	71	Right-handed alpha
Helix 18	18	B	84	89	Right-handed 310
Helix 19	19	B	108	129	Right-handed alpha
Helix 20	20	B	141	153	Right-handed alpha
Helix 21	21	B	156	158	Right-handed 310
Helix 22	22	B	164	181	Right-handed alpha
Helix 23	23	B	183	185	Right-handed 310
Helix 24	24	B	203	206	Right-handed 310
Helix 25	25	B	221	241	Right-handed alpha
Helix 26	26	B	247	263	Right-handed alpha
Helix 27	27	B	278	280	Right-handed 310
Helix 28	28	B	308	329	Right-handed alpha
Helix 29	29	C	30	43	Right-handed alpha
Helix 30	30	C	54	54	Right-handed 310
Helix 31	31	C	55	71	Right-handed alpha
Helix 32	32	C	84	89	Right-handed 310
Helix 33	33	C	108	129	Right-handed alpha
Helix 34	34	C	141	153	Right-handed alpha
Helix 35	35	C	156	158	Right-handed 310
Helix 36	36	C	164	181	Right-handed alpha
Helix 37	37	C	183	185	Right-handed 310
Helix 38	38	C	203	206	Right-handed 310
Helix 39	39	C	221	241	Right-handed alpha
Helix 40	40	C	247	263	Right-handed alpha
Helix 41	41	C	278	280	Right-handed 310
Helix 42	42	C	308	330	Right-handed alpha
Helix 43	43	D	30	43	Right-handed alpha
Helix 44	44	D	54	54	Right-handed 310
Helix 45	45	D	55	71	Right-handed alpha
Helix 46	46	D	84	89	Right-handed 310
Helix 47	47	D	108	129	Right-handed alpha
Helix 48	48	D	141	153	Right-handed alpha
Helix 49	49	D	156	158	Right-handed 310
Helix 50	50	D	164	181	Right-handed alpha
Helix 51	51	D	183	185	Right-handed 310
Helix 52	52	D	203	206	Right-handed 310
Helix 53	53	D	221	242	Right-handed alpha
Helix 54	54	D	247	263	Right-handed alpha
Helix 55	55	D	278	280	Right-handed 310
Helix 56	56	D	308	330	Right-handed alpha

There are 16 sheets in PDB entry 2J5K. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	A	48	52	parallel
Strand 3	A	23	27	parallel
Strand 4	A	93	96	parallel
Strand 5	A	134	137	parallel
Strand 6	A	160	162	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	207	208	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	193	first strand
Strand 2	A	199	201	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	276	first strand
Strand 2	A	283	294	anti-parallel
Strand 3	A	297	302	anti-parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	B	48	52	parallel
Strand 3	B	23	27	parallel
Strand 4	B	93	96	parallel
Strand 5	B	134	137	parallel
Strand 6	B	160	162	parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	207	208	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	193	first strand
Strand 2	B	199	201	anti-parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	276	first strand
Strand 2	B	283	294	anti-parallel
Strand 3	B	297	302	anti-parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	48	52	parallel
Strand 3	C	23	27	parallel
Strand 4	C	93	96	parallel
Strand 5	C	134	137	parallel
Strand 6	C	160	162	parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	207	208	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	193	first strand
Strand 2	C	199	201	anti-parallel

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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	276	first strand
Strand 2	C	283	294	anti-parallel
Strand 3	C	297	302	anti-parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	80	first strand
Strand 2	D	48	52	parallel
Strand 3	D	23	27	parallel
Strand 4	D	91	96	parallel
Strand 5	D	134	137	parallel
Strand 6	D	160	162	parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	207	208	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	193	first strand
Strand 2	D	199	201	anti-parallel

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There are 3 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	276	first strand
Strand 2	D	283	294	anti-parallel
Strand 3	D	297	302	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2J5K

Analysis of interatomic Contacts of Structural Units in PDB entry:
2J5K