Analysis of interatomic Contacts of Structural Units in PDB entry:
2J5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J5S entry

There are 2 chains in PDB entry 2J5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3THR 253
B
 GLN 5THR 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2J5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 11Right-handed 310
Helix 2
2
A
39 56Right-handed alpha
Helix 3
3
A
77 81Right-handed 310
Helix 4
4
A
85 105Right-handed alpha
Helix 5
5
A
121 128Right-handed 310
Helix 6
6
A
142 148Right-handed alpha
Helix 7
7
A
154 164Right-handed alpha
Helix 8
8
A
166 174Right-handed alpha
Helix 9
9
A
180 186Right-handed alpha
Helix 10
10
A
194 196Right-handed 310
Helix 11
11
A
197 211Right-handed alpha
Helix 12
12
A
213 250Right-handed alpha
Helix 13
13
B
6 11Right-handed 310
Helix 14
14
B
39 56Right-handed alpha
Helix 15
15
B
77 81Right-handed 310
Helix 16
16
B
85 105Right-handed alpha
Helix 17
17
B
121 128Right-handed 310
Helix 18
18
B
142 148Right-handed alpha
Helix 19
19
B
154 174Right-handed alpha
Helix 20
20
B
180 186Right-handed alpha
Helix 21
21
B
194 196Right-handed 310
Helix 22
22
B
197 211Right-handed alpha
Helix 23
23
B
213 250Right-handed alpha
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There are 8 sheets in PDB entry 2J5S. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 19first strand
Strand 2
A
24 29anti-parallel
Strand 3
A
61 65parallel
Strand 4
A
110 114parallel
Strand 5
A
130 134parallel
Strand 6
A
191 193parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
74 75parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
117 118parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
178 179anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 19first strand
Strand 2
B
24 29anti-parallel
Strand 3
B
61 65parallel
Strand 4
B
110 114parallel
Strand 5
B
130 134parallel
Strand 6
B
191 193parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
74 75parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
117 118parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 139first strand
Strand 2
B
178 179anti-parallel
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