Analysis of interatomic Contacts of Structural Units in PDB entry:
2J5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J5T entry

There are 8 chains in PDB entry 2J5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3ARG 367
B
 ASP 3ARG 367
C
 ASP 3ARG 367
D
 ASP 3ARG 367
E
 ASP 3ARG 367
F
 ASP 3ARG 367
G
 ASP 3ARG 367
H
 ASP 3ARG 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are128 helices in PDB entry 2J5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 17Right-handed alpha
Helix 2
2
A
24 41Right-handed alpha
Helix 3
3
A
51 60Right-handed alpha
Helix 4
4
A
68 93Right-handed alpha
Helix 5
5
A
104 109Right-handed 310
Helix 6
6
A
110 127Right-handed alpha
Helix 7
7
A
148 161Right-handed alpha
Helix 8
8
A
193 197Right-handed 310
Helix 9
9
A
214 227Right-handed alpha
Helix 10
10
A
240 247Right-handed alpha
Helix 11
11
A
263 271Right-handed 310
Helix 12
12
A
281 291Right-handed alpha
Helix 13
14
A
331 339Right-handed alpha
Helix 14
15
A
342 344Right-handed 310
Helix 15
16
A
345 351Right-handed alpha
Helix 16
17
B
12 17Right-handed alpha
Helix 17
18
B
24 41Right-handed alpha
Helix 18
19
B
51 60Right-handed alpha
Helix 19
20
B
68 93Right-handed alpha
Helix 20
21
B
104 109Right-handed 310
Helix 21
22
B
110 127Right-handed alpha
Helix 22
23
B
141 145Right-handed 310
Helix 23
24
B
148 161Right-handed alpha
Helix 24
25
B
195 200Right-handed alpha
Helix 25
26
B
214 227Right-handed alpha
Helix 26
27
B
240 247Right-handed alpha
Helix 27
28
B
263 271Right-handed 310
Helix 28
29
B
281 290Right-handed alpha
Helix 29
31
B
331 339Right-handed alpha
Helix 30
32
B
342 344Right-handed 310
Helix 31
33
B
345 351Right-handed alpha
Helix 32
34
C
12 17Right-handed alpha
Helix 33
35
C
24 41Right-handed alpha
Helix 34
36
C
51 60Right-handed alpha
Helix 35
37
C
68 93Right-handed alpha
Helix 36
38
C
104 109Right-handed 310
Helix 37
39
C
110 127Right-handed alpha
Helix 38
40
C
141 145Right-handed 310
Helix 39
41
C
148 161Right-handed alpha
Helix 40
42
C
195 202Right-handed alpha
Helix 41
43
C
214 227Right-handed alpha
Helix 42
44
C
240 247Right-handed alpha
Helix 43
45
C
263 271Right-handed 310
Helix 44
46
C
281 290Right-handed alpha
Helix 45
47
C
296 298Right-handed 310
Helix 46
48
C
331 339Right-handed alpha
Helix 47
49
C
342 344Right-handed 310
Helix 48
50
C
345 351Right-handed alpha
Helix 49
52
D
12 17Right-handed alpha
Helix 50
53
D
24 41Right-handed alpha
Helix 51
54
D
51 60Right-handed alpha
Helix 52
55
D
68 94Right-handed alpha
Helix 53
56
D
104 109Right-handed 310
Helix 54
57
D
110 127Right-handed alpha
Helix 55
58
D
148 161Right-handed alpha
Helix 56
59
D
195 206Right-handed alpha
Helix 57
60
D
214 227Right-handed alpha
Helix 58
61
D
240 247Right-handed alpha
Helix 59
62
D
263 271Right-handed 310
Helix 60
63
D
281 291Right-handed alpha
Helix 61
64
D
296 298Right-handed 310
Helix 62
65
D
331 339Right-handed alpha
Helix 63
66
D
342 344Right-handed 310
Helix 64
67
D
345 351Right-handed alpha
Helix 65
68
E
12 17Right-handed alpha
Helix 66
69
E
24 41Right-handed alpha
Helix 67
70
E
51 60Right-handed alpha
Helix 68
71
E
68 93Right-handed alpha
Helix 69
72
E
104 109Right-handed 310
Helix 70
73
E
110 127Right-handed alpha
Helix 71
74
E
141 145Right-handed 310
Helix 72
75
E
148 161Right-handed alpha
Helix 73
76
E
195 206Right-handed alpha
Helix 74
77
E
214 227Right-handed alpha
Helix 75
78
E
240 247Right-handed alpha
Helix 76
79
E
263 271Right-handed 310
Helix 77
80
E
281 291Right-handed alpha
Helix 78
81
E
296 298Right-handed 310
Helix 79
82
E
331 339Right-handed alpha
Helix 80
83
E
342 344Right-handed 310
Helix 81
84
E
345 351Right-handed alpha
Helix 82
85
F
12 17Right-handed alpha
Helix 83
86
F
24 41Right-handed alpha
Helix 84
87
F
51 60Right-handed alpha
Helix 85
88
F
68 94Right-handed alpha
Helix 86
89
F
104 109Right-handed 310
Helix 87
90
F
110 127Right-handed alpha
Helix 88
91
F
141 145Right-handed 310
Helix 89
92
F
148 161Right-handed alpha
Helix 90
93
F
214 227Right-handed alpha
Helix 91
94
F
240 247Right-handed alpha
Helix 92
95
F
263 271Right-handed 310
Helix 93
96
F
281 290Right-handed alpha
Helix 94
97
F
296 298Right-handed 310
Helix 95
98
F
331 339Right-handed alpha
Helix 96
99
F
342 344Right-handed 310
Helix 97
100
F
345 351Right-handed alpha
Helix 98
101
G
12 17Right-handed alpha
Helix 99
102
G
24 41Right-handed alpha
Helix 100
103
G
51 60Right-handed alpha
Helix 101
104
G
68 93Right-handed alpha
Helix 102
105
G
104 109Right-handed 310
Helix 103
106
G
110 127Right-handed alpha
Helix 104
107
G
148 161Right-handed alpha
Helix 105
108
G
194 200Right-handed 310
Helix 106
109
G
214 227Right-handed alpha
Helix 107
110
G
240 247Right-handed alpha
Helix 108
111
G
263 271Right-handed 310
Helix 109
112
G
281 291Right-handed alpha
Helix 110
113
G
296 298Right-handed 310
Helix 111
114
G
331 339Right-handed alpha
Helix 112
115
G
342 344Right-handed 310
Helix 113
116
G
345 351Right-handed alpha
Helix 114
117
H
12 17Right-handed alpha
Helix 115
118
H
24 41Right-handed alpha
Helix 116
119
H
51 60Right-handed alpha
Helix 117
120
H
68 94Right-handed alpha
Helix 118
121
H
105 109Right-handed 310
Helix 119
122
H
110 127Right-handed alpha
Helix 120
123
H
141 145Right-handed 310
Helix 121
124
H
148 161Right-handed alpha
Helix 122
125
H
214 227Right-handed alpha
Helix 123
126
H
240 247Right-handed alpha
Helix 124
127
H
263 271Right-handed 310
Helix 125
128
H
281 290Right-handed alpha
Helix 126
129
H
296 298Right-handed 310
Helix 127
130
H
331 339Right-handed alpha
Helix 128
131
H
344 351Right-handed alpha
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There are 16 sheets in PDB entry 2J5T. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB, GA, GB, HA, HB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 103first strand
Strand 2
A
129 135parallel
Strand 3
A
44 49parallel
Strand 4
A
5 11parallel
Strand 5
A
164 169parallel
Strand 6
A
230 235parallel
Strand 7
A
253 255anti-parallel
Strand 8
A
190 191parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 304first strand
Strand 2
A
277 280anti-parallel
Strand 3
A
312 317parallel
Strand 4
A
322 328anti-parallel
Strand 5
A
363 365anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 103first strand
Strand 2
B
130 135parallel
Strand 3
B
44 49parallel
Strand 4
B
5 11parallel
Strand 5
B
164 169parallel
Strand 6
B
230 235parallel
Strand 7
B
253 255anti-parallel
Strand 8
B
190 191parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 304first strand
Strand 2
B
277 280anti-parallel
Strand 3
B
312 316parallel
Strand 4
B
322 328anti-parallel
Strand 5
B
363 365anti-parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 103first strand
Strand 2
C
130 135parallel
Strand 3
C
44 49parallel
Strand 4
C
5 11parallel
Strand 5
C
164 169parallel
Strand 6
C
230 235parallel
Strand 7
C
253 255anti-parallel
Strand 8
C
190 191parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
300 304first strand
Strand 2
C
277 280anti-parallel
Strand 3
C
312 316parallel
Strand 4
C
322 327anti-parallel
Strand 5
C
363 365anti-parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
98 103first strand
Strand 2
D
130 135parallel
Strand 3
D
44 49parallel
Strand 4
D
5 11parallel
Strand 5
D
164 169parallel
Strand 6
D
230 235parallel
Strand 7
D
253 255anti-parallel
Strand 8
D
190 191parallel
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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
300 304first strand
Strand 2
D
277 280anti-parallel
Strand 3
D
312 317parallel
Strand 4
D
322 328anti-parallel
Strand 5
D
363 365anti-parallel
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There are 8 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
98 103first strand
Strand 2
E
130 135parallel
Strand 3
E
44 49parallel
Strand 4
E
5 11parallel
Strand 5
E
164 169parallel
Strand 6
E
230 235parallel
Strand 7
E
253 255anti-parallel
Strand 8
E
190 191parallel
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There are 5 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
300 304first strand
Strand 2
E
277 280anti-parallel
Strand 3
E
312 316parallel
Strand 4
E
322 328anti-parallel
Strand 5
E
363 365anti-parallel
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There are 8 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
98 103first strand
Strand 2
F
130 135parallel
Strand 3
F
44 49parallel
Strand 4
F
5 11parallel
Strand 5
F
164 169parallel
Strand 6
F
230 235parallel
Strand 7
F
253 255anti-parallel
Strand 8
F
190 191parallel
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There are 5 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
300 304first strand
Strand 2
F
277 280anti-parallel
Strand 3
F
312 316parallel
Strand 4
F
322 328anti-parallel
Strand 5
F
363 365anti-parallel
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There are 8 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
98 103first strand
Strand 2
G
130 135parallel
Strand 3
G
44 49parallel
Strand 4
G
5 11parallel
Strand 5
G
164 169parallel
Strand 6
G
230 235parallel
Strand 7
G
253 256anti-parallel
Strand 8
G
190 192parallel
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There are 5 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
300 304first strand
Strand 2
G
277 280anti-parallel
Strand 3
G
312 317parallel
Strand 4
G
322 328anti-parallel
Strand 5
G
363 365anti-parallel
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There are 8 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
98 103first strand
Strand 2
H
130 135parallel
Strand 3
H
44 49parallel
Strand 4
H
5 11parallel
Strand 5
H
164 169parallel
Strand 6
H
230 235parallel
Strand 7
H
253 256anti-parallel
Strand 8
H
190 192parallel
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There are 5 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
300 304first strand
Strand 2
H
277 280anti-parallel
Strand 3
H
312 316parallel
Strand 4
H
322 328anti-parallel
Strand 5
H
363 365anti-parallel
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