Analysis of interatomic Contacts of Structural Units in PDB entry:
2J5U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J5U entry

There are 2 chains in PDB entry 2J5U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 74ASP 284
B
 GLN 77GLU 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2J5U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
78 107Right-handed alpha
Helix 2
2
A
127 131Right-handed 310
Helix 3
3
A
140 144Right-handed 310
Helix 4
4
B
80 85Right-handed alpha
Helix 5
5
B
86 109Right-handed alpha
Helix 6
6
B
110 116Right-handed 310
Helix 7
7
B
127 131Right-handed 310
Helix 8
8
B
140 144Right-handed 310
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There are 4 sheets in PDB entry 2J5U. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 125first strand
Strand 2
A
269 275anti-parallel
Strand 3
A
150 153anti-parallel
Strand 4
A
156 164anti-parallel
Strand 5
A
169 173anti-parallel
Strand 6
A
134 137anti-parallel
Strand 7
A
116 125anti-parallel
Strand 8
A
116 125first strand
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 187first strand
Strand 2
A
193 201anti-parallel
Strand 3
A
206 213anti-parallel
Strand 4
A
253 260anti-parallel
Strand 5
A
238 247anti-parallel
Strand 6
A
223 226anti-parallel
Strand 7
A
183 187anti-parallel
Strand 8
A
183 187first strand
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 125first strand
Strand 2
B
269 273anti-parallel
Strand 3
B
150 153anti-parallel
Strand 4
B
156 164anti-parallel
Strand 5
B
169 173anti-parallel
Strand 6
B
134 137anti-parallel
Strand 7
B
118 125anti-parallel
Strand 8
B
118 125first strand
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 187first strand
Strand 2
B
193 201anti-parallel
Strand 3
B
206 213anti-parallel
Strand 4
B
253 260anti-parallel
Strand 5
B
238 247anti-parallel
Strand 6
B
223 226anti-parallel
Strand 7
B
183 187anti-parallel
Strand 8
B
183 187first strand
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il