Analysis of interatomic Contacts of Structural Units in PDB entry:
2J5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J5V entry

There are 2 chains in PDB entry 2J5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3ARG 367
B
 ASP 3ARG 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 2J5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 17Right-handed alpha
Helix 2
2
A
24 41Right-handed alpha
Helix 3
3
A
51 61Right-handed alpha
Helix 4
4
A
68 93Right-handed alpha
Helix 5
5
A
104 109Right-handed 310
Helix 6
6
A
110 127Right-handed alpha
Helix 7
7
A
141 145Right-handed 310
Helix 8
8
A
148 161Right-handed alpha
Helix 9
9
A
214 227Right-handed alpha
Helix 10
10
A
240 248Right-handed alpha
Helix 11
11
A
263 271Right-handed 310
Helix 12
12
A
281 292Right-handed alpha
Helix 13
13
A
296 298Right-handed 310
Helix 14
14
A
331 339Right-handed alpha
Helix 15
15
A
342 344Right-handed 310
Helix 16
16
A
345 351Right-handed alpha
Helix 17
17
A
360 362Right-handed 310
Helix 18
18
B
12 18Right-handed alpha
Helix 19
19
B
24 41Right-handed alpha
Helix 20
20
B
51 60Right-handed alpha
Helix 21
21
B
68 93Right-handed alpha
Helix 22
22
B
104 109Right-handed 310
Helix 23
23
B
110 127Right-handed alpha
Helix 24
24
B
141 145Right-handed 310
Helix 25
25
B
148 160Right-handed alpha
Helix 26
26
B
212 227Right-handed alpha
Helix 27
27
B
240 248Right-handed alpha
Helix 28
28
B
263 271Right-handed 310
Helix 29
29
B
281 290Right-handed alpha
Helix 30
30
B
296 298Right-handed 310
Helix 31
31
B
331 339Right-handed alpha
Helix 32
32
B
342 344Right-handed 310
Helix 33
33
B
345 351Right-handed alpha
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There are 4 sheets in PDB entry 2J5V. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 103first strand
Strand 2
A
130 135parallel
Strand 3
A
44 49parallel
Strand 4
A
6 11parallel
Strand 5
A
164 169parallel
Strand 6
A
230 235parallel
Strand 7
A
253 255anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 304first strand
Strand 2
A
277 280anti-parallel
Strand 3
A
312 317parallel
Strand 4
A
322 327anti-parallel
Strand 5
A
364 366anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 103first strand
Strand 2
B
130 135parallel
Strand 3
B
44 49parallel
Strand 4
B
6 11parallel
Strand 5
B
164 169parallel
Strand 6
B
230 235parallel
Strand 7
B
253 255anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 304first strand
Strand 2
B
277 280anti-parallel
Strand 3
B
312 317parallel
Strand 4
B
322 328anti-parallel
Strand 5
B
359 366anti-parallel
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