Analysis of interatomic Contacts of Structural Units in PDB entry:
2J5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J5W entry

There is 1 chain in PDB entry 2J5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1GLU 1041
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 2J5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 38Right-handed alpha
Helix 2
2
A
68 72Right-handed 310
Helix 3
3
A
108 112Right-handed 310
Helix 4
4
A
121 125Right-handed 310
Helix 5
5
A
125 129Right-handed 310
Helix 6
6
A
165 173Right-handed alpha
Helix 7
7
A
208 210Right-handed 310
Helix 8
8
A
212 221Right-handed alpha
Helix 9
9
A
223 227Right-handed 310
Helix 10
10
A
231 238Right-handed alpha
Helix 11
11
A
321 327Right-handed alpha
Helix 12
12
A
386 391Right-handed alpha
Helix 13
13
A
421 428Right-handed 310
Helix 14
14
A
464 468Right-handed 310
Helix 15
15
A
503 507Right-handed 310
Helix 16
16
A
525 533Right-handed alpha
Helix 17
17
A
569 571Right-handed 310
Helix 18
18
A
573 582Right-handed alpha
Helix 19
19
A
584 588Right-handed 310
Helix 20
20
A
592 599Right-handed alpha
Helix 21
21
A
682 688Right-handed alpha
Helix 22
22
A
730 741Right-handed alpha
Helix 23
23
A
780 787Right-handed 310
Helix 24
24
A
843 847Right-handed 310
Helix 25
25
A
865 872Right-handed alpha
Helix 26
26
A
907 909Right-handed 310
Helix 27
27
A
911 920Right-handed alpha
Helix 28
28
A
922 926Right-handed 310
Helix 29
29
A
930 937Right-handed alpha
Helix 30
30
A
1023 1029Right-handed alpha
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There are 15 sheets in PDB entry 2J5W. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 56first strand
Strand 2
A
2 15anti-parallel
Strand 3
A
85 93parallel
Strand 4
A
135 141anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
175 181parallel
Strand 3
A
155 161anti-parallel
Strand 4
A
101 102anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
239 243anti-parallel
Strand 3
A
196 206anti-parallel
Strand 4
A
261 268parallel
Strand 5
A
302 308anti-parallel
Strand 6
A
285 287anti-parallel
Strand 7
A
290 292anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 257first strand
Strand 2
A
330 336parallel
Strand 3
A
313 319anti-parallel
Strand 4
A
276 280anti-parallel
Strand 5
A
294 297anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 409first strand
Strand 2
A
351 365anti-parallel
Strand 3
A
440 448parallel
Strand 4
A
495 501anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 437first strand
Strand 2
A
535 541parallel
Strand 3
A
515 521anti-parallel
Strand 4
A
457 459anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 561first strand
Strand 2
A
623 628parallel
Strand 3
A
663 668anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 567first strand
Strand 2
A
600 604anti-parallel
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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
616 618first strand
Strand 2
A
691 697parallel
Strand 3
A
674 680anti-parallel
Strand 4
A
637 641anti-parallel
Strand 5
A
655 658anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 648first strand
Strand 2
A
651 653anti-parallel
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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
759 768first strand
Strand 2
A
711 725anti-parallel
Strand 3
A
799 807parallel
Strand 4
A
835 841anti-parallel
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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
793 796first strand
Strand 2
A
875 881parallel
Strand 3
A
855 861anti-parallel
Strand 4
A
816 817anti-parallel
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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
938 942first strand
Strand 2
A
894 905anti-parallel
Strand 3
A
960 967parallel
Strand 4
A
1004 1009anti-parallel
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There are 5 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 956first strand
Strand 2
A
1032 1038parallel
Strand 3
A
1015 1021anti-parallel
Strand 4
A
975 979anti-parallel
Strand 5
A
996 999anti-parallel
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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
984 986first strand
Strand 2
A
992 994anti-parallel
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