Analysis of interatomic Contacts of Structural Units in PDB entry:
2J5Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J5Z entry

There are 3 chains in PDB entry 2J5Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 63ARG 276
B
 GLY 66ARG 276
C
 GLY 66ARG 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 2J5Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
69 76Right-handed alpha
Helix 2
2
A
101 105Right-handed 310
Helix 3
3
A
123 130Right-handed alpha
Helix 4
4
A
141 150Right-handed alpha
Helix 5
5
A
179 183Right-handed 310
Helix 6
6
A
200 204Right-handed 310
Helix 7
7
A
221 227Right-handed alpha
Helix 8
8
B
69 76Right-handed alpha
Helix 9
9
B
101 105Right-handed 310
Helix 10
10
B
123 130Right-handed alpha
Helix 11
11
B
141 149Right-handed alpha
Helix 12
12
B
179 183Right-handed 310
Helix 13
13
B
200 204Right-handed 310
Helix 14
14
B
221 227Right-handed alpha
Helix 15
15
C
69 76Right-handed alpha
Helix 16
16
C
101 105Right-handed 310
Helix 17
17
C
123 130Right-handed alpha
Helix 18
18
C
141 150Right-handed alpha
Helix 19
19
C
179 183Right-handed 310
Helix 20
20
C
200 204Right-handed 310
Helix 21
21
C
221 227Right-handed alpha
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There are 4 sheets in PDB entry 2J5Z. Click on sheet of interest to get list of strands forming it: AA, AB, AC, CA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
138 139anti-parallel
Strand 3
A
107 113anti-parallel
Strand 4
A
93 99anti-parallel
Strand 5
A
80 87anti-parallel
Strand 6
B
131 133parallel
Strand 7
B
138 139anti-parallel
Strand 8
B
107 113anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
138 139anti-parallel
Strand 3
A
107 113anti-parallel
Strand 4
A
270 276anti-parallel
Strand 5
A
155 161anti-parallel
Strand 6
A
167 172anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
186 188anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
175 177first strand
Strand 2
C
186 188anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il