Analysis of interatomic Contacts of Structural Units in PDB entry:
2J61


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J61 entry

There are 2 chains in PDB entry 2J61 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 73ALA 288
B
 CYS 73ALA 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2J61. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
79 86Right-handed alpha
Helix 2
2
A
111 115Right-handed 310
Helix 3
3
A
133 140Right-handed alpha
Helix 4
4
A
151 160Right-handed alpha
Helix 5
5
A
210 214Right-handed 310
Helix 6
6
A
231 237Right-handed alpha
Helix 7
7
A
269 273Right-handed alpha
Helix 8
8
B
79 86Right-handed alpha
Helix 9
9
B
111 115Right-handed 310
Helix 10
10
B
133 140Right-handed alpha
Helix 11
11
B
151 160Right-handed alpha
Helix 12
12
B
210 214Right-handed 310
Helix 13
13
B
231 236Right-handed alpha
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There are 8 sheets in PDB entry 2J61. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 97first strand
Strand 2
A
103 109anti-parallel
Strand 3
A
117 123anti-parallel
Strand 4
A
280 287anti-parallel
Strand 5
A
164 171anti-parallel
Strand 6
A
177 187anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 97first strand
Strand 2
A
103 109anti-parallel
Strand 3
A
117 123anti-parallel
Strand 4
A
148 149anti-parallel
Strand 5
A
141 142anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
239 240anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
267 268anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
276 277anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 97first strand
Strand 2
B
103 109anti-parallel
Strand 3
B
117 123anti-parallel
Strand 4
B
280 287anti-parallel
Strand 5
B
164 171anti-parallel
Strand 6
B
177 179anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 97first strand
Strand 2
B
103 109anti-parallel
Strand 3
B
117 123anti-parallel
Strand 4
B
148 149anti-parallel
Strand 5
B
141 142anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 258first strand
Strand 2
B
276 277anti-parallel
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