Analysis of interatomic Contacts of Structural Units in PDB entry:
2J63


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J63 entry

There are 2 chains in PDB entry 2J63 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 90PRO 447
B
 ILE 90PRO 447
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2J63. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
92 101Right-handed alpha
Helix 2
2
A
104 109Right-handed alpha
Helix 3
3
A
120 124Right-handed 310
Helix 4
4
A
139 147Right-handed alpha
Helix 5
5
A
149 159Right-handed alpha
Helix 6
6
A
174 180Right-handed alpha
Helix 7
7
A
90 215Right-handed alpha
Helix 8
8
A
286 293Right-handed alpha
Helix 9
9
A
293 310Right-handed alpha
Helix 10
10
A
350 355Right-handed alpha
Helix 11
11
A
361 375Right-handed alpha
Helix 12
12
A
380 385Right-handed alpha
Helix 13
13
A
418 421Right-handed 310
Helix 14
14
B
92 101Right-handed alpha
Helix 15
15
B
104 109Right-handed alpha
Helix 16
16
B
120 124Right-handed 310
Helix 17
17
B
139 147Right-handed alpha
Helix 18
18
B
149 159Right-handed alpha
Helix 19
19
B
174 180Right-handed alpha
Helix 20
20
A
90 215Right-handed alpha
Helix 21
21
B
286 293Right-handed alpha
Helix 22
22
B
293 310Right-handed alpha
Helix 23
23
B
350 355Right-handed alpha
Helix 24
24
B
361 375Right-handed alpha
Helix 25
25
B
380 385Right-handed alpha
Helix 26
26
B
417 421Right-handed alpha
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There are 4 sheets in PDB entry 2J63. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 192first strand
Strand 2
A
203 208anti-parallel
Strand 3
A
162 166anti-parallel
Strand 4
A
129 136parallel
Strand 5
A
440 445anti-parallel
Strand 6
A
423 428anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 222first strand
Strand 2
A
252 257anti-parallel
Strand 3
A
270 276anti-parallel
Strand 4
A
329 335parallel
Strand 5
A
411 416anti-parallel
Strand 6
A
377 379anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 192first strand
Strand 2
B
203 208anti-parallel
Strand 3
B
162 166anti-parallel
Strand 4
B
129 136parallel
Strand 5
B
440 445anti-parallel
Strand 6
B
423 428anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 222first strand
Strand 2
B
252 257anti-parallel
Strand 3
B
270 276anti-parallel
Strand 4
B
329 335parallel
Strand 5
B
411 416anti-parallel
Strand 6
B
377 379anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il