Analysis of interatomic Contacts of Structural Units in PDB entry:
2J6E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2J6E entry

There are 6 chains in PDB entry 2J6E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 236	PRO 445
B	PRO 238	GLY 446
H	GLN 1	PRO 214
I	GLN 1	PRO 214
L	GLN 1	GLU 210
M	GLN 1	CYS 211

There are 20 helices in PDB entry 2J6E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	246	252	Right-handed alpha
Helix 2	2	A	309	315	Right-handed alpha
Helix 3	3	A	354	358	Right-handed 310
Helix 4	4	A	414	420	Right-handed alpha
Helix 5	5	A	432	434	Right-handed 310
Helix 6	6	B	246	252	Right-handed alpha
Helix 7	7	B	309	315	Right-handed alpha
Helix 8	8	B	354	360	Right-handed 310
Helix 9	9	B	414	419	Right-handed alpha
Helix 10	10	B	432	436	Right-handed 310
Helix 11	11	H	28	32	Right-handed 310
Helix 12	12	H	63	65	Right-handed 310
Helix 13	13	I	28	32	Right-handed 310
Helix 14	14	I	61	64	Right-handed 310
Helix 15	15	I	73	75	Right-handed 310
Helix 16	16	I	83	87	Right-handed 310
Helix 17	17	L	121	126	Right-handed alpha
Helix 18	18	L	181	185	Right-handed 310
Helix 19	19	A	236	30	Right-handed 310
Helix 20	20	M	181	186	Right-handed alpha

There are 29 sheets in PDB entry 2J6E. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, HA, HB, HC, HD, HE, HF, IA, IB, IC, ID, LA, LB, LC, LD, MA, MB, MC, MD, ME,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	243	first strand
Strand 2	A	258	266	anti-parallel
Strand 3	A	300	307	anti-parallel
Strand 4	A	288	294	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	273	279	anti-parallel
Strand 3	A	319	325	anti-parallel
Strand 4	A	332	336	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	351	first strand
Strand 2	A	362	372	anti-parallel
Strand 3	A	404	413	anti-parallel
Strand 4	A	391	393	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	351	first strand
Strand 2	A	362	372	anti-parallel
Strand 3	A	404	413	anti-parallel
Strand 4	A	397	398	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	383	first strand
Strand 2	A	422	428	anti-parallel
Strand 3	A	436	442	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	243	first strand
Strand 2	B	258	264	anti-parallel
Strand 3	B	300	307	anti-parallel
Strand 4	B	293	294	anti-parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	279	first strand
Strand 2	B	319	323	anti-parallel
Strand 3	B	333	336	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	362	372	anti-parallel
Strand 3	B	404	413	anti-parallel
Strand 4	B	391	393	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	362	372	anti-parallel
Strand 3	B	404	413	anti-parallel
Strand 4	B	397	398	anti-parallel

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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	382	first strand
Strand 2	B	423	428	anti-parallel
Strand 3	B	437	441	anti-parallel

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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 5 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	35	39	anti-parallel
Strand 4	H	88	95	anti-parallel
Strand 5	H	108	109	anti-parallel

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There are 5 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	35	39	anti-parallel
Strand 4	H	88	95	anti-parallel
Strand 5	H	100	103	anti-parallel

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There are 3 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	123	first strand
Strand 2	H	136	143	anti-parallel
Strand 3	H	182	185	anti-parallel

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There are 3 strands in HE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	154	155	first strand
Strand 2	H	198	201	anti-parallel
Strand 3	H	210	213	anti-parallel

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There are 2 strands in HF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	171	172	first strand
Strand 2	H	177	178	anti-parallel

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There are 4 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	69	72	anti-parallel

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There are 9 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	95	anti-parallel
Strand 4	I	57	59	first strand
Strand 5	I	46	51	anti-parallel
Strand 6	I	35	39	anti-parallel
Strand 7	I	88	95	anti-parallel
Strand 8	I	101	103	anti-parallel
Strand 9	I	88	95	anti-parallel

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There are 7 strands in IC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	120	124	first strand
Strand 2	I	136	143	anti-parallel
Strand 3	I	176	185	anti-parallel
Strand 4	I	166	167	anti-parallel
Strand 5	I	176	185	anti-parallel
Strand 6	I	171	173	anti-parallel
Strand 7	I	176	185	anti-parallel

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There are 3 strands in ID sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	152	155	first strand
Strand 2	I	198	202	anti-parallel
Strand 3	I	209	213	anti-parallel

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There are 3 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	17	23	first strand
Strand 2	L	70	76	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 4 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	48	first strand
Strand 2	L	34	38	anti-parallel
Strand 3	L	85	92	anti-parallel
Strand 4	L	95	98	anti-parallel

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There are 4 strands in LC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	118	first strand
Strand 2	L	132	134	anti-parallel
Strand 3	L	176	178	anti-parallel
Strand 4	L	159	161	anti-parallel

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There are 4 strands in LD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	196	anti-parallel
Strand 4	L	204	206	anti-parallel

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There are 3 strands in MA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	18	23	first strand
Strand 2	M	70	75	anti-parallel
Strand 3	M	62	65	anti-parallel

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There are 7 strands in MB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	46	48	first strand
Strand 2	M	34	38	anti-parallel
Strand 3	M	84	92	anti-parallel
Strand 4	M	95	98	anti-parallel
Strand 5	M	84	92	anti-parallel
Strand 6	M	102	104	anti-parallel
Strand 7	M	84	92	anti-parallel

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There are 3 strands in MC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	117	118	first strand
Strand 2	M	132	134	anti-parallel
Strand 3	M	176	178	anti-parallel

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There are 2 strands in MD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	138	139	first strand
Strand 2	M	172	173	anti-parallel

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There are 4 strands in ME sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	153	154	first strand
Strand 2	M	146	150	anti-parallel
Strand 3	M	191	195	anti-parallel
Strand 4	M	203	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2J6E

Analysis of interatomic Contacts of Structural Units in PDB entry:
2J6E