Analysis of interatomic Contacts of Structural Units in PDB entry:
2J6I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2J6I entry

There are 4 chains in PDB entry 2J6I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	TYR 353
B	ALA 1	TYR 353
C	ALA 1	TYR 353
D	ALA 1	TYR 353

There are 84 helices in PDB entry 2J6I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	11	17	Right-handed alpha
Helix 2	2	A	26	29	Right-handed 310
Helix 3	3	A	30	37	Right-handed alpha
Helix 4	4	A	52	58	Right-handed alpha
Helix 5	5	A	59	61	Right-handed 310
Helix 6	6	A	75	82	Right-handed alpha
Helix 7	7	A	99	107	Right-handed alpha
Helix 8	8	A	119	136	Right-handed alpha
Helix 9	9	A	137	147	Right-handed alpha
Helix 10	10	A	151	157	Right-handed alpha
Helix 11	11	A	173	184	Right-handed alpha
Helix 12	12	A	185	187	Right-handed 310
Helix 13	13	A	200	207	Right-handed alpha
Helix 14	14	A	214	221	Right-handed alpha
Helix 15	15	A	240	245	Right-handed alpha
Helix 16	16	A	258	261	Right-handed 310
Helix 17	17	A	263	273	Right-handed alpha
Helix 18	18	A	293	298	Right-handed alpha
Helix 19	19	A	312	315	Right-handed 310
Helix 20	20	A	316	336	Right-handed alpha
Helix 21	21	A	342	344	Right-handed 310
Helix 22	22	B	11	17	Right-handed alpha
Helix 23	23	B	26	29	Right-handed 310
Helix 24	24	B	30	37	Right-handed alpha
Helix 25	25	B	52	58	Right-handed alpha
Helix 26	26	B	59	61	Right-handed 310
Helix 27	27	B	75	82	Right-handed alpha
Helix 28	28	B	99	107	Right-handed alpha
Helix 29	29	B	119	136	Right-handed alpha
Helix 30	30	B	137	147	Right-handed alpha
Helix 31	31	B	151	157	Right-handed alpha
Helix 32	32	B	173	184	Right-handed alpha
Helix 33	33	B	185	187	Right-handed 310
Helix 34	34	B	200	207	Right-handed alpha
Helix 35	35	B	214	221	Right-handed alpha
Helix 36	36	B	240	245	Right-handed alpha
Helix 37	37	B	258	261	Right-handed 310
Helix 38	38	B	263	274	Right-handed alpha
Helix 39	39	B	293	298	Right-handed alpha
Helix 40	40	B	312	315	Right-handed 310
Helix 41	41	B	316	337	Right-handed alpha
Helix 42	42	B	342	344	Right-handed 310
Helix 43	43	C	10	15	Right-handed 310
Helix 44	44	C	26	29	Right-handed 310
Helix 45	45	C	30	37	Right-handed alpha
Helix 46	46	C	52	58	Right-handed alpha
Helix 47	47	C	59	61	Right-handed 310
Helix 48	48	C	75	82	Right-handed alpha
Helix 49	49	C	99	107	Right-handed alpha
Helix 50	50	C	119	136	Right-handed alpha
Helix 51	51	C	137	147	Right-handed alpha
Helix 52	52	C	151	157	Right-handed alpha
Helix 53	53	C	173	184	Right-handed alpha
Helix 54	54	C	185	187	Right-handed 310
Helix 55	55	C	200	207	Right-handed alpha
Helix 56	56	C	214	222	Right-handed alpha
Helix 57	57	C	240	245	Right-handed alpha
Helix 58	58	C	258	261	Right-handed 310
Helix 59	59	C	263	274	Right-handed alpha
Helix 60	60	C	293	298	Right-handed alpha
Helix 61	61	C	312	315	Right-handed 310
Helix 62	62	C	316	336	Right-handed alpha
Helix 63	63	C	342	344	Right-handed 310
Helix 64	64	D	11	17	Right-handed alpha
Helix 65	65	D	26	29	Right-handed 310
Helix 66	66	D	30	37	Right-handed alpha
Helix 67	67	D	52	58	Right-handed alpha
Helix 68	68	D	59	61	Right-handed 310
Helix 69	69	D	75	82	Right-handed alpha
Helix 70	70	D	99	107	Right-handed alpha
Helix 71	71	D	119	136	Right-handed alpha
Helix 72	72	D	137	147	Right-handed alpha
Helix 73	73	D	151	157	Right-handed alpha
Helix 74	74	D	173	184	Right-handed alpha
Helix 75	75	D	185	187	Right-handed 310
Helix 76	76	D	200	208	Right-handed alpha
Helix 77	77	D	214	221	Right-handed alpha
Helix 78	78	D	240	245	Right-handed alpha
Helix 79	79	D	258	261	Right-handed 310
Helix 80	80	D	263	273	Right-handed alpha
Helix 81	81	D	293	298	Right-handed alpha
Helix 82	82	D	312	315	Right-handed 310
Helix 83	83	D	316	336	Right-handed alpha
Helix 84	84	D	342	344	Right-handed 310

There are 8 sheets in PDB entry 2J6I. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	2	6	parallel
Strand 3	A	63	66	parallel
Strand 4	A	87	90	parallel
Strand 5	A	111	114	parallel
Strand 6	A	346	348	anti-parallel

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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	211	first strand
Strand 2	A	190	194	parallel
Strand 3	A	166	170	parallel
Strand 4	A	224	227	parallel
Strand 5	A	251	255	parallel
Strand 6	A	276	281	parallel
Strand 7	A	306	308	parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	44	first strand
Strand 2	B	2	6	parallel
Strand 3	B	63	66	parallel
Strand 4	B	87	90	parallel
Strand 5	B	111	114	parallel
Strand 6	B	346	348	anti-parallel

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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	211	first strand
Strand 2	B	190	194	parallel
Strand 3	B	166	170	parallel
Strand 4	B	224	227	parallel
Strand 5	B	251	255	parallel
Strand 6	B	276	281	parallel
Strand 7	B	306	308	parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	44	first strand
Strand 2	C	2	6	parallel
Strand 3	C	63	66	parallel
Strand 4	C	87	90	parallel
Strand 5	C	111	114	parallel
Strand 6	C	346	348	anti-parallel

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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	211	first strand
Strand 2	C	190	194	parallel
Strand 3	C	166	170	parallel
Strand 4	C	224	227	parallel
Strand 5	C	251	255	parallel
Strand 6	C	276	281	parallel
Strand 7	C	306	308	parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	44	first strand
Strand 2	D	2	6	parallel
Strand 3	D	63	66	parallel
Strand 4	D	87	90	parallel
Strand 5	D	111	114	parallel
Strand 6	D	346	348	anti-parallel

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There are 7 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	211	first strand
Strand 2	D	190	194	parallel
Strand 3	D	166	170	parallel
Strand 4	D	224	227	parallel
Strand 5	D	251	255	parallel
Strand 6	D	276	281	parallel
Strand 7	D	306	308	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2J6I

Analysis of interatomic Contacts of Structural Units in PDB entry:
2J6I