Analysis of interatomic Contacts of Structural Units in PDB entry:
2J6K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J6K entry

There are 12 chains in PDB entry 2J6K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2LYS 58
B
 VAL 2LYS 58
C
 VAL 2LYS 58
D
 VAL 2LYS 58
E
 VAL 2LYS 58
F
 VAL 2LYS 58
G
 VAL 2LYS 58
H
 VAL 2LYS 58
I
 VAL 2LYS 58
J
 VAL 2LYS 58
K
 VAL 2LYS 58
L
 VAL 2LYS 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2J6K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 53Right-handed 310
Helix 2
2
B
51 53Right-handed 310
Helix 3
3
C
51 53Right-handed 310
Helix 4
4
D
51 53Right-handed 310
Helix 5
5
E
51 53Right-handed 310
Helix 6
6
F
51 53Right-handed 310
Helix 7
7
G
51 53Right-handed 310
Helix 8
8
H
51 53Right-handed 310
Helix 9
9
I
51 53Right-handed 310
Helix 10
10
J
51 53Right-handed 310
Helix 11
11
K
51 53Right-handed 310
Helix 12
12
L
51 53Right-handed 310
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There are 12 sheets in PDB entry 2J6K. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, GA, HA, IA, JA, KA, LA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
37 42anti-parallel
Strand 3
A
25 31anti-parallel
Strand 4
A
4 6anti-parallel
Strand 5
A
54 56anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 50first strand
Strand 2
B
37 42anti-parallel
Strand 3
B
25 31anti-parallel
Strand 4
B
4 6anti-parallel
Strand 5
B
54 56anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 50first strand
Strand 2
C
37 42anti-parallel
Strand 3
C
25 31anti-parallel
Strand 4
C
4 6anti-parallel
Strand 5
C
54 56anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
45 50first strand
Strand 2
D
37 42anti-parallel
Strand 3
D
25 31anti-parallel
Strand 4
D
4 6anti-parallel
Strand 5
D
54 56anti-parallel
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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
45 50first strand
Strand 2
E
37 42anti-parallel
Strand 3
E
25 31anti-parallel
Strand 4
E
4 6anti-parallel
Strand 5
E
54 56anti-parallel
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There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
45 50first strand
Strand 2
F
37 42anti-parallel
Strand 3
F
25 31anti-parallel
Strand 4
F
4 6anti-parallel
Strand 5
F
54 56anti-parallel
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There are 5 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
45 50first strand
Strand 2
G
37 42anti-parallel
Strand 3
G
25 31anti-parallel
Strand 4
G
4 6anti-parallel
Strand 5
G
54 56anti-parallel
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There are 5 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
45 50first strand
Strand 2
H
37 42anti-parallel
Strand 3
H
25 31anti-parallel
Strand 4
H
4 6anti-parallel
Strand 5
H
54 56anti-parallel
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There are 5 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
45 50first strand
Strand 2
I
37 42anti-parallel
Strand 3
I
25 31anti-parallel
Strand 4
I
4 6anti-parallel
Strand 5
I
54 56anti-parallel
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There are 5 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
45 50first strand
Strand 2
J
37 42anti-parallel
Strand 3
J
25 31anti-parallel
Strand 4
J
4 6anti-parallel
Strand 5
J
54 56anti-parallel
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There are 5 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
45 50first strand
Strand 2
K
37 42anti-parallel
Strand 3
K
25 31anti-parallel
Strand 4
K
4 6anti-parallel
Strand 5
K
54 56anti-parallel
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There are 5 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
45 50first strand
Strand 2
L
37 42anti-parallel
Strand 3
L
25 31anti-parallel
Strand 4
L
4 6anti-parallel
Strand 5
L
54 56anti-parallel
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