Analysis of interatomic Contacts of Structural Units in PDB entry:
2J6L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2J6L entry

There are 3 chains in PDB entry 2J6L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	SER 500
B	SER 3	SER 500
C	THR 4	ARG 308

There are167 helices in PDB entry 2J6L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	5	9	Right-handed 310
Helix 2	2	A	9	19	Right-handed 310
Helix 3	3	A	57	76	Right-handed alpha
Helix 4	4	A	79	97	Right-handed alpha
Helix 5	5	A	97	109	Right-handed alpha
Helix 6	6	A	112	134	Right-handed alpha
Helix 7	7	A	171	184	Right-handed alpha
Helix 8	8	A	193	195	Right-handed 310
Helix 9	9	A	196	214	Right-handed alpha
Helix 10	10	A	217	219	Right-handed 310
Helix 11	11	A	227	237	Right-handed alpha
Helix 12	12	A	248	262	Right-handed alpha
Helix 13	13	A	283	297	Right-handed alpha
Helix 14	14	A	298	301	Right-handed 310
Helix 15	15	A	315	329	Right-handed alpha
Helix 16	16	A	347	364	Right-handed alpha
Helix 17	17	A	394	399	Right-handed alpha
Helix 18	18	A	413	423	Right-handed alpha
Helix 19	19	A	436	445	Right-handed alpha
Helix 20	20	A	472	476	Right-handed 310
Helix 21	21	A	484	488	Right-handed 310
Helix 22	22	B	5	9	Right-handed 310
Helix 23	23	B	9	19	Right-handed 310
Helix 24	24	B	57	76	Right-handed alpha
Helix 25	25	B	79	97	Right-handed alpha
Helix 26	26	B	97	109	Right-handed alpha
Helix 27	27	B	112	134	Right-handed alpha
Helix 28	28	B	171	184	Right-handed alpha
Helix 29	29	B	193	195	Right-handed 310
Helix 30	30	B	196	214	Right-handed alpha
Helix 31	31	B	217	219	Right-handed 310
Helix 32	32	B	227	237	Right-handed alpha
Helix 33	33	B	248	262	Right-handed alpha
Helix 34	34	B	283	297	Right-handed alpha
Helix 35	35	B	298	301	Right-handed 310
Helix 36	36	B	315	328	Right-handed alpha
Helix 37	37	B	347	364	Right-handed alpha
Helix 38	38	B	394	399	Right-handed alpha
Helix 39	39	B	413	423	Right-handed alpha
Helix 40	40	B	436	444	Right-handed alpha
Helix 41	41	B	484	488	Right-handed 310
Helix 42	42	C	5	9	Right-handed 310
Helix 43	43	C	9	19	Right-handed 310
Helix 44	44	C	57	76	Right-handed alpha
Helix 45	45	C	79	97	Right-handed alpha
Helix 46	46	C	97	109	Right-handed alpha
Helix 47	47	C	112	134	Right-handed alpha
Helix 48	48	C	171	184	Right-handed alpha
Helix 49	49	C	193	195	Right-handed 310
Helix 50	50	C	196	214	Right-handed alpha
Helix 51	51	C	217	219	Right-handed 310
Helix 52	52	C	227	237	Right-handed alpha
Helix 53	53	C	248	262	Right-handed alpha
Helix 54	54	C	283	297	Right-handed alpha
Helix 55	55	C	298	301	Right-handed 310
Helix 56	56	C	315	329	Right-handed alpha
Helix 57	57	C	347	364	Right-handed alpha
Helix 58	58	C	394	399	Right-handed alpha
Helix 59	59	C	413	423	Right-handed alpha
Helix 60	60	C	436	444	Right-handed alpha
Helix 61	61	C	472	476	Right-handed 310
Helix 62	62	C	484	488	Right-handed 310
Helix 63	63	D	5	9	Right-handed 310
Helix 64	64	D	9	19	Right-handed 310
Helix 65	65	D	57	76	Right-handed alpha
Helix 66	66	D	79	97	Right-handed alpha
Helix 67	67	D	97	109	Right-handed alpha
Helix 68	68	D	112	134	Right-handed alpha
Helix 69	69	D	171	184	Right-handed alpha
Helix 70	70	D	193	195	Right-handed 310
Helix 71	71	D	196	214	Right-handed alpha
Helix 72	72	D	217	219	Right-handed 310
Helix 73	73	D	227	237	Right-handed alpha
Helix 74	74	D	248	262	Right-handed alpha
Helix 75	75	D	283	297	Right-handed alpha
Helix 76	76	D	298	301	Right-handed 310
Helix 77	77	D	315	329	Right-handed alpha
Helix 78	78	D	347	364	Right-handed alpha
Helix 79	79	D	394	399	Right-handed alpha
Helix 80	80	D	413	423	Right-handed alpha
Helix 81	81	D	436	444	Right-handed alpha
Helix 82	82	D	472	476	Right-handed 310
Helix 83	83	D	484	488	Right-handed 310
Helix 84	84	E	5	9	Right-handed 310
Helix 85	85	E	9	19	Right-handed 310
Helix 86	86	E	57	76	Right-handed alpha
Helix 87	87	E	79	97	Right-handed alpha
Helix 88	88	E	97	109	Right-handed alpha
Helix 89	89	E	112	134	Right-handed alpha
Helix 90	90	E	171	184	Right-handed alpha
Helix 91	91	E	193	195	Right-handed 310
Helix 92	92	E	196	214	Right-handed alpha
Helix 93	93	E	217	219	Right-handed 310
Helix 94	94	E	227	237	Right-handed alpha
Helix 95	95	E	248	262	Right-handed alpha
Helix 96	96	E	283	297	Right-handed alpha
Helix 97	97	E	298	301	Right-handed 310
Helix 98	98	E	315	329	Right-handed alpha
Helix 99	99	E	347	364	Right-handed alpha
Helix 100	100	E	394	399	Right-handed alpha
Helix 101	101	E	413	423	Right-handed alpha
Helix 102	102	E	436	444	Right-handed alpha
Helix 103	103	E	472	476	Right-handed 310
Helix 104	104	E	484	488	Right-handed 310
Helix 105	105	F	5	9	Right-handed 310
Helix 106	106	F	9	19	Right-handed 310
Helix 107	107	F	57	76	Right-handed alpha
Helix 108	108	F	79	97	Right-handed alpha
Helix 109	109	F	97	109	Right-handed alpha
Helix 110	110	F	112	134	Right-handed alpha
Helix 111	111	F	171	184	Right-handed alpha
Helix 112	112	F	193	195	Right-handed 310
Helix 113	113	F	196	214	Right-handed alpha
Helix 114	114	F	217	219	Right-handed 310
Helix 115	115	F	227	237	Right-handed alpha
Helix 116	116	F	248	262	Right-handed alpha
Helix 117	117	F	283	297	Right-handed alpha
Helix 118	118	F	298	301	Right-handed 310
Helix 119	119	F	315	329	Right-handed alpha
Helix 120	120	F	347	364	Right-handed alpha
Helix 121	121	F	394	399	Right-handed alpha
Helix 122	122	F	413	423	Right-handed alpha
Helix 123	123	F	436	445	Right-handed alpha
Helix 124	124	F	472	476	Right-handed 310
Helix 125	125	F	484	488	Right-handed 310
Helix 126	126	G	5	9	Right-handed 310
Helix 127	127	G	9	19	Right-handed 310
Helix 128	128	G	57	76	Right-handed alpha
Helix 129	129	G	79	97	Right-handed alpha
Helix 130	130	G	97	109	Right-handed alpha
Helix 131	131	G	112	134	Right-handed alpha
Helix 132	132	G	171	184	Right-handed alpha
Helix 133	133	G	193	195	Right-handed 310
Helix 134	134	G	196	214	Right-handed alpha
Helix 135	135	G	217	219	Right-handed 310
Helix 136	136	G	227	237	Right-handed alpha
Helix 137	137	G	248	262	Right-handed alpha
Helix 138	138	G	283	297	Right-handed alpha
Helix 139	139	G	298	301	Right-handed 310
Helix 140	140	G	315	329	Right-handed alpha
Helix 141	141	G	347	364	Right-handed alpha
Helix 142	142	G	394	399	Right-handed alpha
Helix 143	143	G	413	423	Right-handed alpha
Helix 144	144	G	436	445	Right-handed alpha
Helix 145	145	G	472	476	Right-handed 310
Helix 146	146	G	484	488	Right-handed 310
Helix 147	147	H	5	9	Right-handed 310
Helix 148	148	H	9	19	Right-handed 310
Helix 149	149	H	57	76	Right-handed alpha
Helix 150	150	H	79	97	Right-handed alpha
Helix 151	151	H	97	109	Right-handed alpha
Helix 152	152	H	112	134	Right-handed alpha
Helix 153	153	H	171	184	Right-handed alpha
Helix 154	154	H	193	195	Right-handed 310
Helix 155	155	H	196	214	Right-handed alpha
Helix 156	156	H	217	219	Right-handed 310
Helix 157	157	H	227	237	Right-handed alpha
Helix 158	158	H	248	262	Right-handed alpha
Helix 159	159	H	283	297	Right-handed alpha
Helix 160	160	H	298	301	Right-handed 310
Helix 161	161	H	315	329	Right-handed alpha
Helix 162	162	H	347	364	Right-handed alpha
Helix 163	163	H	394	399	Right-handed alpha
Helix 164	164	H	413	423	Right-handed alpha
Helix 165	165	H	436	444	Right-handed alpha
Helix 166	166	H	472	476	Right-handed 310
Helix 167	167	H	484	488	Right-handed 310

There are 41 sheets in PDB entry 2J6L. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, BF, CA, CB, CC, CD, CE, A, DB, C, DD, DE, EA, EB, EC, ED, EE, FA, FB, FC, FD, FE, GA, GB, GC, GD, GE, HA, HB, HC, HD, HE,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	25	first strand
Strand 2	A	49	54	parallel
Strand 3	A	38	42	anti-parallel

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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	27	28	anti-parallel
Strand 3	A	221	224	anti-parallel
Strand 4	A	187	191	parallel
Strand 5	A	160	164	parallel
Strand 6	A	242	246	parallel
Strand 7	A	265	269	parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	149	157	anti-parallel
Strand 3	A	490	498	anti-parallel

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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	370	first strand
Strand 2	A	385	388	anti-parallel
Strand 3	A	405	411	parallel
Strand 4	A	306	312	parallel
Strand 5	A	274	278	parallel
Strand 6	A	429	433	parallel
Strand 7	A	453	456	parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	469	first strand
Strand 2	A	480	481	anti-parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	25	first strand
Strand 2	B	49	54	parallel
Strand 3	B	38	42	anti-parallel

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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	27	28	anti-parallel
Strand 3	B	221	224	anti-parallel
Strand 4	B	187	191	parallel
Strand 5	B	160	164	parallel
Strand 6	B	242	246	parallel
Strand 7	B	265	269	parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	149	157	anti-parallel
Strand 3	B	490	498	anti-parallel

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There are 7 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	370	first strand
Strand 2	B	385	388	anti-parallel
Strand 3	B	405	411	parallel
Strand 4	B	306	312	parallel
Strand 5	B	274	278	parallel
Strand 6	B	429	433	parallel
Strand 7	B	453	456	parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	427	first strand
Strand 2	B	472	473	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	469	first strand
Strand 2	B	480	481	anti-parallel

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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	25	first strand
Strand 2	C	49	54	parallel
Strand 3	C	38	42	anti-parallel

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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	27	28	anti-parallel
Strand 3	C	221	224	anti-parallel
Strand 4	C	187	191	parallel
Strand 5	C	160	164	parallel
Strand 6	C	242	246	parallel
Strand 7	C	265	269	parallel

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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	149	157	anti-parallel
Strand 3	C	490	498	anti-parallel

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There are 7 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	370	first strand
Strand 2	C	385	388	anti-parallel
Strand 3	C	405	411	parallel
Strand 4	C	306	312	parallel
Strand 5	C	274	278	parallel
Strand 6	C	429	433	parallel
Strand 7	C	453	456	parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	468	469	first strand
Strand 2	C	480	481	anti-parallel

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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	25	first strand
Strand 2	D	49	54	parallel
Strand 3	D	38	42	anti-parallel

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There are 7 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	27	28	anti-parallel
Strand 3	D	221	224	anti-parallel
Strand 4	D	187	191	parallel
Strand 5	D	160	164	parallel
Strand 6	D	242	246	parallel
Strand 7	D	265	269	parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	149	157	anti-parallel
Strand 3	D	490	498	anti-parallel

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There are 7 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	367	370	first strand
Strand 2	D	385	388	anti-parallel
Strand 3	D	405	411	parallel
Strand 4	D	306	312	parallel
Strand 5	D	274	278	parallel
Strand 6	D	429	433	parallel
Strand 7	D	453	456	parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	468	469	first strand
Strand 2	D	480	481	anti-parallel

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There are 3 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	25	first strand
Strand 2	E	49	54	parallel
Strand 3	E	38	42	anti-parallel

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There are 7 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	27	28	anti-parallel
Strand 3	E	221	224	anti-parallel
Strand 4	E	187	191	parallel
Strand 5	E	160	164	parallel
Strand 6	E	242	246	parallel
Strand 7	E	265	269	parallel

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There are 3 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	142	first strand
Strand 2	E	149	157	anti-parallel
Strand 3	E	490	498	anti-parallel

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There are 7 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	367	370	first strand
Strand 2	E	385	388	anti-parallel
Strand 3	E	405	411	parallel
Strand 4	E	306	312	parallel
Strand 5	E	274	278	parallel
Strand 6	E	429	433	parallel
Strand 7	E	453	456	parallel

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There are 2 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	468	469	first strand
Strand 2	E	480	481	anti-parallel

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There are 3 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	25	first strand
Strand 2	F	49	54	parallel
Strand 3	F	38	42	anti-parallel

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There are 7 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	33	first strand
Strand 2	F	27	28	anti-parallel
Strand 3	F	221	224	anti-parallel
Strand 4	F	187	191	parallel
Strand 5	F	160	164	parallel
Strand 6	F	242	246	parallel
Strand 7	F	265	269	parallel

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There are 3 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	141	142	first strand
Strand 2	F	149	157	anti-parallel
Strand 3	F	490	498	anti-parallel

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There are 7 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	367	370	first strand
Strand 2	F	385	388	anti-parallel
Strand 3	F	405	411	parallel
Strand 4	F	306	312	parallel
Strand 5	F	274	278	parallel
Strand 6	F	429	433	parallel
Strand 7	F	453	456	parallel

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There are 2 strands in FE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	468	469	first strand
Strand 2	F	480	481	anti-parallel

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There are 3 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	25	first strand
Strand 2	G	49	54	parallel
Strand 3	G	38	42	anti-parallel

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There are 7 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	33	first strand
Strand 2	G	27	28	anti-parallel
Strand 3	G	221	224	anti-parallel
Strand 4	G	187	191	parallel
Strand 5	G	160	164	parallel
Strand 6	G	242	246	parallel
Strand 7	G	265	269	parallel

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There are 3 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	141	142	first strand
Strand 2	G	149	157	anti-parallel
Strand 3	G	490	498	anti-parallel

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There are 7 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	367	370	first strand
Strand 2	G	385	388	anti-parallel
Strand 3	G	405	411	parallel
Strand 4	G	306	312	parallel
Strand 5	G	274	278	parallel
Strand 6	G	429	433	parallel
Strand 7	G	453	456	parallel

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There are 2 strands in GE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	468	469	first strand
Strand 2	G	480	481	anti-parallel

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There are 3 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	25	first strand
Strand 2	H	49	54	parallel
Strand 3	H	38	42	anti-parallel

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There are 7 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	32	33	first strand
Strand 2	H	27	28	anti-parallel
Strand 3	H	221	224	anti-parallel
Strand 4	H	187	191	parallel
Strand 5	H	160	164	parallel
Strand 6	H	242	246	parallel
Strand 7	H	265	269	parallel

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There are 3 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	141	142	first strand
Strand 2	H	149	157	anti-parallel
Strand 3	H	490	498	anti-parallel

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There are 7 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	367	370	first strand
Strand 2	H	385	388	anti-parallel
Strand 3	H	405	411	parallel
Strand 4	H	306	312	parallel
Strand 5	H	274	278	parallel
Strand 6	H	429	433	parallel
Strand 7	H	453	456	parallel

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There are 2 strands in HE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	468	469	first strand
Strand 2	H	480	481	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2J6L

Analysis of interatomic Contacts of Structural Units in PDB entry:
2J6L