Analysis of interatomic Contacts of Structural Units in PDB entry:
2J6R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J6R entry

There are 2 chains in PDB entry 2J6R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0TYR 262
B
 SER 0TYR 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2J6R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 43Right-handed 310
Helix 2
2
A
171 183Right-handed alpha
Helix 3
3
A
186 198Right-handed alpha
Helix 4
4
B
41 43Right-handed 310
Helix 5
5
B
171 183Right-handed alpha
Helix 6
6
B
186 198Right-handed alpha
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There are 6 sheets in PDB entry 2J6R. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
7 17parallel
Strand 3
A
249 262anti-parallel
Strand 4
A
80 86anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 53first strand
Strand 2
A
236 241anti-parallel
Strand 3
A
121 138anti-parallel
Strand 4
A
107 115anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 206first strand
Strand 2
A
144 149parallel
Strand 3
A
121 138anti-parallel
Strand 4
A
222 231anti-parallel
Strand 5
A
58 64anti-parallel
Strand 6
B
25 29anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
7 17parallel
Strand 3
B
249 262anti-parallel
Strand 4
B
80 86anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 53first strand
Strand 2
B
236 241anti-parallel
Strand 3
B
121 138anti-parallel
Strand 4
B
107 115anti-parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 206first strand
Strand 2
B
144 149parallel
Strand 3
B
121 138anti-parallel
Strand 4
B
222 231anti-parallel
Strand 5
B
58 64anti-parallel
Strand 6
A
25 29anti-parallel
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