Analysis of interatomic Contacts of Structural Units in PDB entry:
2J6V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J6V entry

There are 4 chains in PDB entry 2J6V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2PRO 228
A
 VAL 230ALA 278
B
 MSE 1PRO 228
B
 VAL 230ALA 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2J6V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 26Right-handed 310
Helix 2
2
A
27 53Right-handed alpha
Helix 3
3
A
60 64Right-handed 310
Helix 4
4
A
75 94Right-handed alpha
Helix 5
5
A
112 133Right-handed alpha
Helix 6
6
A
150 163Right-handed alpha
Helix 7
7
A
165 171Right-handed alpha
Helix 8
8
A
182 194Right-handed alpha
Helix 9
9
A
200 207Right-handed alpha
Helix 10
10
A
212 221Right-handed alpha
Helix 11
11
A
222 224Right-handed 310
Helix 12
12
A
249 260Right-handed alpha
Helix 13
13
A
272 276Right-handed 310
Helix 14
14
B
22 26Right-handed 310
Helix 15
15
B
27 53Right-handed alpha
Helix 16
16
B
60 64Right-handed 310
Helix 17
17
B
75 94Right-handed alpha
Helix 18
18
B
112 133Right-handed alpha
Helix 19
19
B
150 163Right-handed alpha
Helix 20
20
B
165 171Right-handed alpha
Helix 21
21
B
182 194Right-handed alpha
Helix 22
22
B
200 207Right-handed alpha
Helix 23
23
B
212 221Right-handed alpha
Helix 24
24
B
222 224Right-handed 310
Helix 25
25
B
249 260Right-handed alpha
Helix 26
26
B
272 276Right-handed 310
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There are 4 sheets in PDB entry 2J6V. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
172 175parallel
Strand 3
A
139 143parallel
Strand 4
A
97 100parallel
Strand 5
A
56 58parallel
Strand 6
A
2 7parallel
Strand 7
A
264 268parallel
Strand 8
A
230 232parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
15 16anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 198first strand
Strand 2
B
172 175parallel
Strand 3
B
139 143parallel
Strand 4
B
97 100parallel
Strand 5
B
56 58parallel
Strand 6
B
2 7parallel
Strand 7
B
264 268parallel
Strand 8
B
230 232parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
15 16anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il