Analysis of interatomic Contacts of Structural Units in PDB entry:
2J7K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J7K entry

There is 1 chain in PDB entry 2J7K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5ILE 688
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2J7K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 37Right-handed alpha
Helix 2
2
A
92 101Right-handed alpha
Helix 3
3
A
117 128Right-handed alpha
Helix 4
4
A
145 156Right-handed alpha
Helix 5
5
A
202 222Right-handed alpha
Helix 6
6
A
224 234Right-handed alpha
Helix 7
7
A
238 252Right-handed alpha
Helix 8
8
A
268 280Right-handed alpha
Helix 9
9
A
418 423Right-handed alpha
Helix 10
10
A
424 430Right-handed alpha
Helix 11
11
A
455 468Right-handed alpha
Helix 12
12
A
537 550Right-handed alpha
Helix 13
13
A
578 597Right-handed alpha
Helix 14
14
A
617 625Right-handed alpha
Helix 15
15
A
650 652Right-handed 310
Helix 16
16
A
654 662Right-handed alpha
Helix 17
17
A
680 688Right-handed alpha
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There are 8 sheets in PDB entry 2J7K. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
77 82anti-parallel
Strand 3
A
12 19parallel
Strand 4
A
103 109parallel
Strand 5
A
132 137parallel
Strand 6
A
256 261parallel
Strand 7
A
161 163parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 168first strand
Strand 2
A
176 179anti-parallel
Strand 3
A
184 188anti-parallel
Strand 4
A
196 199anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
298 300anti-parallel
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There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 319first strand
Strand 2
A
323 332anti-parallel
Strand 3
A
374 379anti-parallel
Strand 4
A
348 358parallel
Strand 5
A
339 343anti-parallel
Strand 6
A
388 390anti-parallel
Strand 7
A
310 319anti-parallel
Strand 8
A
310 319first strand
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 336first strand
Strand 2
A
368 369anti-parallel
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There are 7 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 441first strand
Strand 2
A
450 453anti-parallel
Strand 3
A
409 415anti-parallel
Strand 4
A
474 476anti-parallel
Strand 5
A
409 415anti-parallel
Strand 6
A
480 481anti-parallel
Strand 7
A
409 415anti-parallel
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There are 7 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 486first strand
Strand 2
A
600 613anti-parallel
Strand 3
A
630 637first strand
Strand 4
A
640 648anti-parallel
Strand 5
A
600 613anti-parallel
Strand 6
A
668 678anti-parallel
Strand 7
A
600 613anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 501first strand
Strand 2
A
504 516anti-parallel
Strand 3
A
563 571anti-parallel
Strand 4
A
523 527parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il