Analysis of interatomic Contacts of Structural Units in PDB entry:
2J83


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J83 entry

There are 4 chains in PDB entry 2J83 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 63LYS 296
A
 MET 298LEU 321
B
 GLU 63LYS 296
B
 MET 298LEU 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2J83. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
77 81Right-handed 310
Helix 2
2
A
83 98Right-handed alpha
Helix 3
3
A
102 108Right-handed 310
Helix 4
4
A
109 113Right-handed 310
Helix 5
5
A
152 156Right-handed 310
Helix 6
6
A
156 160Right-handed 310
Helix 7
7
A
197 201Right-handed 310
Helix 8
8
A
208 210Right-handed 310
Helix 9
9
A
223 234Right-handed alpha
Helix 10
10
A
294 298Right-handed 310
Helix 11
11
A
302 315Right-handed alpha
Helix 12
12
A
317 321Right-handed 310
Helix 13
13
B
77 81Right-handed 310
Helix 14
14
B
83 98Right-handed alpha
Helix 15
15
B
102 108Right-handed 310
Helix 16
16
B
109 115Right-handed 310
Helix 17
17
B
152 156Right-handed 310
Helix 18
18
B
156 160Right-handed 310
Helix 19
19
B
197 201Right-handed 310
Helix 20
20
B
208 210Right-handed 310
Helix 21
21
B
223 234Right-handed alpha
Helix 22
22
B
294 298Right-handed 310
Helix 23
23
B
302 315Right-handed alpha
Helix 24
24
B
317 321Right-handed 310
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There are 6 sheets in PDB entry 2J83. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
65 75parallel
Strand 3
A
171 176parallel
Strand 4
A
203 206parallel
Strand 5
A
189 191anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
65 75parallel
Strand 3
A
138 142parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
179 180parallel
Strand 3
A
186 187anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 125first strand
Strand 2
B
65 75parallel
Strand 3
B
171 176parallel
Strand 4
B
203 206parallel
Strand 5
B
189 191anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 125first strand
Strand 2
B
65 75parallel
Strand 3
B
138 142parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
179 180parallel
Strand 3
B
186 187anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il