Analysis of interatomic Contacts of Structural Units in PDB entry:
2J86


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J86 entry

There are 2 chains in PDB entry 2J86 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 240
B
 MET 1VAL 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2J86. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 65Right-handed alpha
Helix 2
2
A
67 90Right-handed alpha
Helix 3
3
A
91 94Right-handed 310
Helix 4
4
A
192 197Right-handed alpha
Helix 5
5
A
200 210Right-handed alpha
Helix 6
6
A
212 227Right-handed alpha
Helix 7
7
B
40 65Right-handed alpha
Helix 8
8
B
67 90Right-handed alpha
Helix 9
9
B
91 94Right-handed 310
Helix 10
10
B
138 144Right-handed alpha
Helix 11
11
B
157 161Right-handed 310
Helix 12
12
B
192 197Right-handed alpha
Helix 13
13
B
200 210Right-handed alpha
Helix 14
14
B
212 228Right-handed alpha
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There are 6 sheets in PDB entry 2J86. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
233 239anti-parallel
Strand 3
A
187 191anti-parallel
Strand 4
A
121 125anti-parallel
Strand 5
A
130 132anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
29 36anti-parallel
Strand 3
A
100 105anti-parallel
Strand 4
A
111 117anti-parallel
Strand 5
A
176 181anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
29 36anti-parallel
Strand 3
A
97 98anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 8first strand
Strand 2
B
233 239anti-parallel
Strand 3
B
187 191anti-parallel
Strand 4
B
122 125anti-parallel
Strand 5
B
130 132anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 22first strand
Strand 2
B
29 36anti-parallel
Strand 3
B
100 105anti-parallel
Strand 4
B
111 117anti-parallel
Strand 5
B
176 181anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 22first strand
Strand 2
B
29 36anti-parallel
Strand 3
B
97 98anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il