Analysis of interatomic Contacts of Structural Units in PDB entry:
2J88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J88 entry

There are 3 chains in PDB entry 2J88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 10LEU 333
H
 VAL 2VAL 180
L
 ASP 1ILE 205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2J88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 26Right-handed 310
Helix 2
2
A
30 35Right-handed alpha
Helix 3
3
A
41 45Right-handed 310
Helix 4
4
A
78 82Right-handed 310
Helix 5
5
A
83 99Right-handed alpha
Helix 6
6
A
118 122Right-handed 310
Helix 7
7
A
123 125Right-handed 310
Helix 8
8
A
126 141Right-handed alpha
Helix 9
9
A
145 176Right-handed alpha
Helix 10
10
A
202 211Right-handed alpha
Helix 11
11
A
212 219Right-handed alpha
Helix 12
12
A
233 253Right-handed alpha
Helix 13
13
A
279 293Right-handed alpha
Helix 14
14
A
303 308Right-handed 310
Helix 15
15
A
309 323Right-handed alpha
Helix 16
16
A
323 331Right-handed alpha
Helix 17
17
H
61 64Right-handed 310
Helix 18
18
H
83 87Right-handed 310
Helix 19
19
L
79 83Right-handed 310
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There are 13 sheets in PDB entry 2J88. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, HA, HB, HC, HD, LA, LB, LC, LD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
297 301parallel
Strand 3
A
265 267parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
107 111parallel
Strand 3
A
180 183parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
72 74anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
261 262parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
273 277anti-parallel
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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
106 110parallel
Strand 3
H
88 96anti-parallel
Strand 4
H
35 39anti-parallel
Strand 5
H
46 52anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in HC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
106 110parallel
Strand 3
H
88 96anti-parallel
Strand 4
H
99 102anti-parallel
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There are 4 strands in HD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
119 120first strand
Strand 2
H
140 144anti-parallel
Strand 3
H
173 177anti-parallel
Strand 4
H
168 170anti-parallel
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There are 4 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in LC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 116first strand
Strand 2
L
133 139anti-parallel
Strand 3
L
173 178anti-parallel
Strand 4
L
160 163anti-parallel
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There are 2 strands in LD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
144 148first strand
Strand 2
L
194 198anti-parallel
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