Analysis of interatomic Contacts of Structural Units in PDB entry:
2J8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J8A entry

There is 1 chain in PDB entry 2J8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 247LYS 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 2J8A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
264 274Right-handed alpha
Helix 2
2
A
309 321Right-handed alpha
Helix 3
3
A
341 365Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 2J8A.

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 285first strand
Strand 2
A
292 299anti-parallel
Strand 3
A
249 254anti-parallel
Strand 4
A
331 337anti-parallel
Strand 5
A
326 328anti-parallel
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