Analysis of interatomic Contacts of Structural Units in PDB entry:
2J8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J8J entry

There are 2 chains in PDB entry 2J8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 272GLU 361
B
 PHE 272GLU 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2J8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
297 300Right-handed 310
Helix 2
2
A
301 306Right-handed alpha
Helix 3
3
A
354 360Right-handed 310
Helix 4
4
B
297 300Right-handed 310
Helix 5
5
B
301 306Right-handed alpha
Helix 6
6
B
354 361Right-handed 310
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There are 3 sheets in PDB entry 2J8J. Click on sheet of interest to get list of strands forming it: AA, AB, BA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
348 351anti-parallel
Strand 3
A
311 314anti-parallel
Strand 4
A
328 332anti-parallel
Strand 5
A
287 291anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 284first strand
Strand 2
A
340 343anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 284first strand
Strand 2
B
340 352anti-parallel
Strand 3
B
311 314anti-parallel
Strand 4
B
328 331anti-parallel
Strand 5
B
288 291anti-parallel
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