Analysis of interatomic Contacts of Structural Units in PDB entry:
2J8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J8S entry

There are 5 chains in PDB entry 2J8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 1044
B
 MET 1PHE 1033
C
 MET 1ILE 1040
D
 GLY 11GLN 166
E
 LEU 14GLN 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are147 helices in PDB entry 2J8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 7Right-handed alpha
Helix 2
2
A
8 30Right-handed alpha
Helix 3
3
A
53 61Right-handed alpha
Helix 4
4
A
61 68Right-handed alpha
Helix 5
5
A
99 115Right-handed alpha
Helix 6
6
A
116 118Right-handed 310
Helix 7
7
A
119 124Right-handed alpha
Helix 8
8
A
150 162Right-handed alpha
Helix 9
9
A
162 168Right-handed alpha
Helix 10
10
A
189 196Right-handed alpha
Helix 11
11
A
199 211Right-handed alpha
Helix 12
12
A
242 248Right-handed alpha
Helix 13
13
A
298 314Right-handed alpha
Helix 14
14
A
315 317Right-handed 310
Helix 15
15
A
329 359Right-handed alpha
Helix 16
16
A
363 366Right-handed 310
Helix 17
17
A
367 386Right-handed alpha
Helix 18
18
A
391 423Right-handed alpha
Helix 19
19
A
426 454Right-handed alpha
Helix 20
20
A
455 459Right-handed 310
Helix 21
21
A
460 486Right-handed alpha
Helix 22
22
A
487 494Right-handed alpha
Helix 23
23
A
511 536Right-handed alpha
Helix 24
24
A
540 559Right-handed alpha
Helix 25
25
A
583 601Right-handed alpha
Helix 26
26
A
633 637Right-handed 310
Helix 27
27
A
643 656Right-handed alpha
Helix 28
28
A
691 708Right-handed alpha
Helix 29
29
A
732 740Right-handed alpha
Helix 30
30
A
742 756Right-handed alpha
Helix 31
31
A
777 781Right-handed 310
Helix 32
32
A
782 788Right-handed 310
Helix 33
33
A
836 850Right-handed alpha
Helix 34
34
A
861 868Right-handed alpha
Helix 35
35
A
874 892Right-handed alpha
Helix 36
36
A
897 903Right-handed alpha
Helix 37
37
A
904 919Right-handed alpha
Helix 38
38
A
924 956Right-handed alpha
Helix 39
39
A
958 986Right-handed alpha
Helix 40
40
A
986 992Right-handed alpha
Helix 41
41
A
996 1033Right-handed alpha
Helix 42
42
B
1 7Right-handed alpha
Helix 43
43
B
8 30Right-handed alpha
Helix 44
44
B
53 61Right-handed alpha
Helix 45
45
B
61 67Right-handed alpha
Helix 46
46
B
99 113Right-handed alpha
Helix 47
47
B
114 118Right-handed 310
Helix 48
48
B
119 126Right-handed alpha
Helix 49
49
B
150 162Right-handed alpha
Helix 50
50
B
162 168Right-handed alpha
Helix 51
51
B
189 196Right-handed alpha
Helix 52
52
B
199 211Right-handed alpha
Helix 53
53
B
242 248Right-handed alpha
Helix 54
54
B
298 314Right-handed alpha
Helix 55
55
B
315 317Right-handed 310
Helix 56
56
B
329 359Right-handed alpha
Helix 57
57
B
361 386Right-handed alpha
Helix 58
58
B
391 400Right-handed alpha
Helix 59
59
B
401 422Right-handed alpha
Helix 60
60
B
426 454Right-handed alpha
Helix 61
61
B
455 459Right-handed 310
Helix 62
62
B
460 497Right-handed alpha
Helix 63
63
B
511 535Right-handed alpha
Helix 64
64
B
538 558Right-handed alpha
Helix 65
65
B
583 601Right-handed alpha
Helix 66
66
B
633 637Right-handed 310
Helix 67
67
B
639 642Right-handed 310
Helix 68
68
B
643 656Right-handed alpha
Helix 69
69
B
691 707Right-handed alpha
Helix 70
70
B
732 740Right-handed alpha
Helix 71
71
B
742 756Right-handed alpha
Helix 72
72
B
777 780Right-handed 310
Helix 73
73
B
782 788Right-handed 310
Helix 74
74
B
801 804Right-handed alpha
Helix 75
75
B
836 849Right-handed alpha
Helix 76
76
B
863 868Right-handed alpha
Helix 77
77
B
872 892Right-handed alpha
Helix 78
78
B
897 903Right-handed alpha
Helix 79
79
B
904 920Right-handed alpha
Helix 80
80
B
924 957Right-handed alpha
Helix 81
81
B
959 992Right-handed alpha
Helix 82
82
B
996 1033Right-handed alpha
Helix 83
83
C
1 8Right-handed alpha
Helix 84
84
C
8 30Right-handed alpha
Helix 85
85
C
53 61Right-handed alpha
Helix 86
86
C
61 68Right-handed alpha
Helix 87
87
C
99 115Right-handed alpha
Helix 88
88
C
116 118Right-handed 310
Helix 89
89
C
119 124Right-handed alpha
Helix 90
90
C
150 162Right-handed alpha
Helix 91
91
C
162 168Right-handed alpha
Helix 92
92
C
189 195Right-handed alpha
Helix 93
93
C
199 211Right-handed alpha
Helix 94
94
C
242 248Right-handed alpha
Helix 95
95
C
262 265Right-handed alpha
Helix 96
96
C
298 312Right-handed alpha
Helix 97
97
C
313 317Right-handed 310
Helix 98
98
C
329 360Right-handed alpha
Helix 99
99
C
361 386Right-handed alpha
Helix 100
100
C
392 403Right-handed alpha
Helix 101
101
C
406 424Right-handed alpha
Helix 102
102
C
426 435Right-handed alpha
Helix 103
103
C
438 452Right-handed alpha
Helix 104
104
C
453 459Right-handed 310
Helix 105
105
C
460 487Right-handed alpha
Helix 106
106
C
487 494Right-handed alpha
Helix 107
107
C
511 535Right-handed alpha
Helix 108
108
C
538 559Right-handed alpha
Helix 109
109
C
583 601Right-handed alpha
Helix 110
110
C
633 637Right-handed 310
Helix 111
111
C
639 642Right-handed 310
Helix 112
112
C
643 656Right-handed alpha
Helix 113
113
C
691 707Right-handed alpha
Helix 114
114
C
732 739Right-handed alpha
Helix 115
115
C
742 755Right-handed alpha
Helix 116
116
C
777 781Right-handed 310
Helix 117
117
C
782 788Right-handed 310
Helix 118
118
C
836 850Right-handed alpha
Helix 119
119
C
860 872Right-handed alpha
Helix 120
120
C
872 892Right-handed alpha
Helix 121
121
C
895 903Right-handed alpha
Helix 122
122
C
904 920Right-handed alpha
Helix 123
123
C
924 953Right-handed alpha
Helix 124
124
C
959 971Right-handed alpha
Helix 125
125
C
971 986Right-handed alpha
Helix 126
126
C
986 992Right-handed alpha
Helix 127
127
C
996 1032Right-handed alpha
Helix 128
128
D
12 25Right-handed alpha
Helix 129
129
D
26 36Right-handed alpha
Helix 130
130
D
49 57Right-handed alpha
Helix 131
131
D
59 69Right-handed alpha
Helix 132
132
D
82 90Right-handed alpha
Helix 133
133
D
92 102Right-handed alpha
Helix 134
134
D
115 123Right-handed alpha
Helix 135
135
D
125 135Right-handed alpha
Helix 136
136
D
148 157Right-handed alpha
Helix 137
137
D
158 165Right-handed alpha
Helix 138
138
E
14 24Right-handed alpha
Helix 139
139
E
26 36Right-handed alpha
Helix 140
140
E
49 57Right-handed alpha
Helix 141
141
E
59 68Right-handed alpha
Helix 142
142
E
82 90Right-handed alpha
Helix 143
143
E
92 102Right-handed alpha
Helix 144
144
E
115 123Right-handed alpha
Helix 145
145
E
125 135Right-handed alpha
Helix 146
146
E
148 157Right-handed alpha
Helix 147
147
E
158 165Right-handed alpha
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There are 21 sheets in PDB entry 2J8S. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG, BH, CA, CB, CC, CD, CE, CF,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 177first strand
Strand 2
A
284 294anti-parallel
Strand 3
A
128 144anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 177first strand
Strand 2
A
284 294anti-parallel
Strand 3
A
278 281anti-parallel
Strand 4
A
606 613anti-parallel
Strand 5
A
624 631anti-parallel
Strand 6
A
571 577anti-parallel
Strand 7
A
662 666anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 272first strand
Strand 2
A
182 188anti-parallel
Strand 3
A
767 775parallel
Strand 4
A
757 764anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 219first strand
Strand 2
A
232 235anti-parallel
Strand 3
B
724 731parallel
Strand 4
B
805 812anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
259 261anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
805 812first strand
Strand 2
A
724 731anti-parallel
Strand 3
C
232 235parallel
Strand 4
C
215 219anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
790 792first strand
Strand 2
A
798 800anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 131first strand
Strand 2
B
42 48anti-parallel
Strand 3
B
87 94anti-parallel
Strand 4
B
75 83anti-parallel
Strand 5
B
815 819anti-parallel
Strand 6
B
822 831anti-parallel
Strand 7
B
679 686anti-parallel
Strand 8
B
855 859anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 131first strand
Strand 2
B
42 48anti-parallel
Strand 3
B
87 94anti-parallel
Strand 4
B
75 83anti-parallel
Strand 5
B
815 819anti-parallel
Strand 6
B
822 831anti-parallel
Strand 7
B
713 718anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 177first strand
Strand 2
B
284 293anti-parallel
Strand 3
B
138 144anti-parallel
Strand 4
B
321 328anti-parallel
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There are 7 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 177first strand
Strand 2
B
284 293anti-parallel
Strand 3
B
278 281anti-parallel
Strand 4
B
606 613anti-parallel
Strand 5
B
624 631anti-parallel
Strand 6
B
571 577anti-parallel
Strand 7
B
665 666anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 271first strand
Strand 2
B
183 188anti-parallel
Strand 3
B
767 775parallel
Strand 4
B
757 764anti-parallel
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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 219first strand
Strand 2
B
232 235anti-parallel
Strand 3
C
724 731parallel
Strand 4
C
805 812anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 253first strand
Strand 2
B
259 261anti-parallel
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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
790 792first strand
Strand 2
B
798 800anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 33first strand
Strand 2
C
390 391parallel
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There are 11 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 132first strand
Strand 2
C
42 48anti-parallel
Strand 3
C
87 94anti-parallel
Strand 4
C
75 83anti-parallel
Strand 5
C
815 819anti-parallel
Strand 6
C
822 831anti-parallel
Strand 7
C
713 718anti-parallel
Strand 8
C
822 831anti-parallel
Strand 9
C
855 859first strand
Strand 10
C
680 686anti-parallel
Strand 11
C
822 831anti-parallel
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There are 11 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 177first strand
Strand 2
C
284 293anti-parallel
Strand 3
C
321 328first strand
Strand 4
C
138 144anti-parallel
Strand 5
C
284 293anti-parallel
Strand 6
C
662 666first strand
Strand 7
C
571 577anti-parallel
Strand 8
C
624 631anti-parallel
Strand 9
C
606 613anti-parallel
Strand 10
C
278 281anti-parallel
Strand 11
C
284 293anti-parallel
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There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
266 272first strand
Strand 2
C
182 188anti-parallel
Strand 3
C
767 775parallel
Strand 4
C
757 764anti-parallel
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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
250 253first strand
Strand 2
C
259 261anti-parallel
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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
790 792first strand
Strand 2
C
798 800anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il