Analysis of interatomic Contacts of Structural Units in PDB entry:
2J8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J8U entry

There are 10 chains in PDB entry 2J8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1GLU 275
B
 MET 0MET 99
C
 ALA 1LEU 9
E
 MET 0THR 198
F
 GLU 1ALA 245
H
 GLY 1GLU 275
I
 MET 0MET 99
J
 ALA 1LEU 9
L
 MET 0THR 198
M
 GLU 1ALA 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 2J8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 55Right-handed 310
Helix 2
2
A
56 85Right-handed alpha
Helix 3
3
A
137 150Right-handed alpha
Helix 4
4
A
151 161Right-handed alpha
Helix 5
5
A
162 175Right-handed alpha
Helix 6
6
A
175 180Right-handed alpha
Helix 7
7
A
253 255Right-handed 310
Helix 8
8
E
81 85Right-handed 310
Helix 9
9
E
190 195Right-handed alpha
Helix 10
10
F
83 87Right-handed 310
Helix 11
11
F
133 141Right-handed alpha
Helix 12
12
F
200 204Right-handed alpha
Helix 13
13
H
49 53Right-handed 310
Helix 14
14
H
56 85Right-handed alpha
Helix 15
15
H
137 150Right-handed alpha
Helix 16
16
H
151 162Right-handed alpha
Helix 17
17
H
162 175Right-handed alpha
Helix 18
18
H
175 180Right-handed alpha
Helix 19
19
H
253 255Right-handed 310
Helix 20
20
L
81 85Right-handed 310
Helix 21
21
L
190 194Right-handed 310
Helix 22
22
M
83 87Right-handed 310
Helix 23
23
M
118 122Right-handed 310
Helix 24
24
M
133 141Right-handed alpha
Helix 25
25
M
200 205Right-handed alpha
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There are 29 sheets in PDB entry 2J8U. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, EA, EB, EC, ED, EE, FA, FB, FC, FD, HA, HB, HC, IA, IB, LA, LB, LC, LD, MA, MB, MC, MD,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
3 12anti-parallel
Strand 5
A
94 103anti-parallel
Strand 6
A
109 118anti-parallel
Strand 7
A
121 126anti-parallel
Strand 8
A
133 135anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 193first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
241 250anti-parallel
Strand 4
A
228 230anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 193first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
241 250anti-parallel
Strand 4
A
234 235anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
214 219anti-parallel
Strand 3
A
257 262anti-parallel
Strand 4
A
270 272anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
50 51anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
55 56anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
91 94anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 5first strand
Strand 2
E
22 25anti-parallel
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There are 5 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 13first strand
Strand 2
E
110 115parallel
Strand 3
E
86 93anti-parallel
Strand 4
E
31 37anti-parallel
Strand 5
E
44 48anti-parallel
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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 13first strand
Strand 2
E
110 115parallel
Strand 3
E
86 93anti-parallel
Strand 4
E
104 106anti-parallel
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There are 3 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
18 20first strand
Strand 2
E
75 77anti-parallel
Strand 3
E
63 64anti-parallel
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There are 7 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
124 129first strand
Strand 2
E
139 144anti-parallel
Strand 3
E
177 183anti-parallel
Strand 4
E
161 162anti-parallel
Strand 5
E
177 183anti-parallel
Strand 6
E
166 168anti-parallel
Strand 7
E
177 183anti-parallel
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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 7first strand
Strand 2
F
19 25anti-parallel
Strand 3
F
76 79anti-parallel
Strand 4
F
66 68anti-parallel
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There are 9 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 14first strand
Strand 2
F
112 116parallel
Strand 3
F
88 95anti-parallel
Strand 4
F
54 57first strand
Strand 5
F
41 51anti-parallel
Strand 6
F
31 38anti-parallel
Strand 7
F
88 95anti-parallel
Strand 8
F
107 108anti-parallel
Strand 9
F
88 95anti-parallel
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There are 7 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
126 130first strand
Strand 2
F
142 152anti-parallel
Strand 3
F
189 199anti-parallel
Strand 4
F
172 174anti-parallel
Strand 5
F
189 199anti-parallel
Strand 6
F
179 182anti-parallel
Strand 7
F
189 199anti-parallel
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There are 4 strands in FD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
166 168first strand
Strand 2
F
157 163anti-parallel
Strand 3
F
209 216anti-parallel
Strand 4
F
235 242anti-parallel
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There are 8 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
46 47first strand
Strand 2
H
31 37anti-parallel
Strand 3
H
21 28anti-parallel
Strand 4
H
3 12anti-parallel
Strand 5
H
94 103anti-parallel
Strand 6
H
109 118anti-parallel
Strand 7
H
121 126anti-parallel
Strand 8
H
133 135anti-parallel
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There are 7 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
186 192first strand
Strand 2
H
198 208anti-parallel
Strand 3
H
241 250anti-parallel
Strand 4
H
228 230anti-parallel
Strand 5
H
241 250anti-parallel
Strand 6
H
234 235anti-parallel
Strand 7
H
241 250anti-parallel
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There are 4 strands in HC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
222 224first strand
Strand 2
H
214 219anti-parallel
Strand 3
H
257 262anti-parallel
Strand 4
H
270 273anti-parallel
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There are 7 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
6 11first strand
Strand 2
I
21 30anti-parallel
Strand 3
I
62 70anti-parallel
Strand 4
I
50 51anti-parallel
Strand 5
I
62 70anti-parallel
Strand 6
I
55 56anti-parallel
Strand 7
I
62 70anti-parallel
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There are 4 strands in IB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
44 45first strand
Strand 2
I
36 41anti-parallel
Strand 3
I
78 83anti-parallel
Strand 4
I
91 94anti-parallel
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There are 2 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
3 5first strand
Strand 2
L
22 24anti-parallel
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There are 8 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 13first strand
Strand 2
L
110 115parallel
Strand 3
L
87 93anti-parallel
Strand 4
L
44 48first strand
Strand 5
L
31 37anti-parallel
Strand 6
L
87 93anti-parallel
Strand 7
L
104 106anti-parallel
Strand 8
L
87 93anti-parallel
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There are 3 strands in LC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 20first strand
Strand 2
L
75 77anti-parallel
Strand 3
L
62 64anti-parallel
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There are 7 strands in LD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
124 129first strand
Strand 2
L
139 144anti-parallel
Strand 3
L
175 183anti-parallel
Strand 4
L
161 162anti-parallel
Strand 5
L
175 183anti-parallel
Strand 6
L
166 170anti-parallel
Strand 7
L
175 183anti-parallel
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There are 4 strands in MA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
4 7first strand
Strand 2
M
19 25anti-parallel
Strand 3
M
76 79anti-parallel
Strand 4
M
65 68anti-parallel
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There are 9 strands in MB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
10 14first strand
Strand 2
M
112 116parallel
Strand 3
M
88 95anti-parallel
Strand 4
M
54 57first strand
Strand 5
M
41 51anti-parallel
Strand 6
M
31 38anti-parallel
Strand 7
M
88 95anti-parallel
Strand 8
M
107 108anti-parallel
Strand 9
M
88 95anti-parallel
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There are 7 strands in MC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
126 130first strand
Strand 2
M
142 152anti-parallel
Strand 3
M
189 199anti-parallel
Strand 4
M
172 174anti-parallel
Strand 5
M
189 199anti-parallel
Strand 6
M
179 182anti-parallel
Strand 7
M
189 199anti-parallel
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There are 4 strands in MD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
166 168first strand
Strand 2
M
157 163anti-parallel
Strand 3
M
209 216anti-parallel
Strand 4
M
235 242anti-parallel
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