Analysis of interatomic Contacts of Structural Units in PDB entry:
2J8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J8Z entry

There is 1 chain in PDB entry 2J8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 0GLN 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2J8Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 14Right-handed 310
Helix 2
2
A
41 49Right-handed alpha
Helix 3
3
A
115 120Right-handed alpha
Helix 4
4
A
122 134Right-handed alpha
Helix 5
5
A
152 165Right-handed alpha
Helix 6
6
A
175 186Right-handed alpha
Helix 7
7
A
197 206Right-handed alpha
Helix 8
8
A
219 221Right-handed 310
Helix 9
9
A
222 229Right-handed alpha
Helix 10
10
A
250 258Right-handed alpha
Helix 11
11
A
271 286Right-handed alpha
Helix 12
12
A
287 291Right-handed 310
Helix 13
13
A
310 320Right-handed alpha
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There are 4 sheets in PDB entry 2J8Z. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 7first strand
Strand 2
A
16 22anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 103first strand
Strand 2
A
30 39anti-parallel
Strand 3
A
65 73anti-parallel
Strand 4
A
86 90anti-parallel
Strand 5
A
107 109anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 103first strand
Strand 2
A
30 39anti-parallel
Strand 3
A
326 330anti-parallel
Strand 4
A
302 307parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
168 173parallel
Strand 3
A
144 147parallel
Strand 4
A
211 216parallel
Strand 5
A
230 238parallel
Strand 6
A
261 264parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il