Analysis of interatomic Contacts of Structural Units in PDB entry:
2J92


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J92 entry

There are 2 chains in PDB entry 2J92 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7GLU 207
B
 ASP 7VAL 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2J92. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 15Right-handed alpha
Helix 2
2
A
63 65Right-handed 310
Helix 3
3
A
99 102Right-handed 310
Helix 4
4
A
195 207Right-handed alpha
Helix 5
5
B
7 15Right-handed alpha
Helix 6
6
B
46 50Right-handed 310
Helix 7
7
B
63 65Right-handed 310
Helix 8
8
B
99 102Right-handed 310
Helix 9
9
B
159 163Right-handed 310
Helix 10
10
B
195 206Right-handed alpha
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There are 4 sheets in PDB entry 2J92. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
54 57anti-parallel
Strand 3
A
16 23anti-parallel
Strand 4
A
26 37anti-parallel
Strand 5
A
40 44anti-parallel
Strand 6
A
79 90anti-parallel
Strand 7
A
67 76anti-parallel
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There are 13 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 121first strand
Strand 2
A
125 139anti-parallel
Strand 3
A
149 155anti-parallel
Strand 4
A
188 193anti-parallel
Strand 5
A
174 185parallel
Strand 6
A
166 171anti-parallel
Strand 7
A
114 121anti-parallel
Strand 8
A
125 139anti-parallel
Strand 9
A
149 155anti-parallel
Strand 10
A
188 193anti-parallel
Strand 11
A
174 185parallel
Strand 12
A
166 171anti-parallel
Strand 13
A
114 121anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
54 57anti-parallel
Strand 3
B
16 22anti-parallel
Strand 4
B
27 37anti-parallel
Strand 5
B
40 44anti-parallel
Strand 6
B
85 90anti-parallel
Strand 7
B
67 71anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 109first strand
Strand 2
B
137 139anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il