Analysis of interatomic Contacts of Structural Units in PDB entry:
2J9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J9P entry

There are 2 chains in PDB entry 2J9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5GLN 462
B
 ASP 5GLN 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 2J9P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 17Right-handed alpha
Helix 2
2
A
18 22Right-handed 310
Helix 3
3
A
50 53Right-handed 310
Helix 4
4
A
54 66Right-handed alpha
Helix 5
5
A
104 115Right-handed alpha
Helix 6
6
A
142 146Right-handed 310
Helix 7
7
A
244 260Right-handed alpha
Helix 8
8
A
287 299Right-handed alpha
Helix 9
9
A
300 317Right-handed alpha
Helix 10
10
A
320 332Right-handed alpha
Helix 11
11
A
333 336Right-handed 310
Helix 12
12
A
338 342Right-handed 310
Helix 13
13
A
357 368Right-handed alpha
Helix 14
14
A
369 371Right-handed 310
Helix 15
15
A
373 380Right-handed alpha
Helix 16
16
A
392 396Right-handed 310
Helix 17
17
A
445 462Right-handed alpha
Helix 18
18
B
5 17Right-handed alpha
Helix 19
19
B
18 22Right-handed 310
Helix 20
20
B
50 53Right-handed 310
Helix 21
21
B
54 64Right-handed alpha
Helix 22
22
B
102 116Right-handed alpha
Helix 23
23
B
149 152Right-handed 310
Helix 24
24
B
244 258Right-handed alpha
Helix 25
25
B
259 261Right-handed 310
Helix 26
26
B
287 297Right-handed alpha
Helix 27
27
B
300 317Right-handed alpha
Helix 28
28
B
320 332Right-handed alpha
Helix 29
29
B
333 336Right-handed 310
Helix 30
30
B
338 342Right-handed 310
Helix 31
31
B
357 369Right-handed alpha
Helix 32
32
B
373 379Right-handed alpha
Helix 33
33
B
388 393Right-handed alpha
Helix 34
34
B
394 396Right-handed 310
Helix 35
35
B
445 462Right-handed alpha
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There are 10 sheets in PDB entry 2J9P. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
25 32anti-parallel
Strand 3
A
432 440anti-parallel
Strand 4
A
418 426anti-parallel
Strand 5
A
408 415anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 271first strand
Strand 2
A
125 128parallel
Strand 3
A
91 96parallel
Strand 4
A
73 78anti-parallel
Strand 5
A
278 284anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
120 121parallel
Strand 3
A
263 264parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 189first strand
Strand 2
A
169 175anti-parallel
Strand 3
A
236 241anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 204first strand
Strand 2
A
222 230parallel
Strand 3
A
213 216anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 42first strand
Strand 2
B
25 32anti-parallel
Strand 3
B
432 440anti-parallel
Strand 4
B
418 426anti-parallel
Strand 5
B
408 415anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 270first strand
Strand 2
B
125 128parallel
Strand 3
B
91 95parallel
Strand 4
B
73 77anti-parallel
Strand 5
B
279 284anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 121first strand
Strand 2
B
263 264parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 189first strand
Strand 2
B
169 175anti-parallel
Strand 3
B
237 241anti-parallel
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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 204first strand
Strand 2
B
222 230parallel
Strand 3
B
211 216anti-parallel
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