Analysis of interatomic Contacts of Structural Units in PDB entry:
2J9T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J9T entry

There are 2 chains in PDB entry 2J9T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 35THR 301
B
 MET 35THR 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2J9T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 43Right-handed alpha
Helix 2
2
A
47 64Right-handed alpha
Helix 3
3
A
82 109Right-handed alpha
Helix 4
4
A
127 168Right-handed alpha
Helix 5
5
A
183 197Right-handed alpha
Helix 6
6
A
208 217Right-handed alpha
Helix 7
7
A
232 240Right-handed alpha
Helix 8
8
A
251 300Right-handed alpha
Helix 9
9
B
36 43Right-handed alpha
Helix 10
10
B
47 64Right-handed alpha
Helix 11
11
B
82 109Right-handed alpha
Helix 12
12
B
127 168Right-handed alpha
Helix 13
13
B
183 197Right-handed alpha
Helix 14
14
B
208 217Right-handed alpha
Helix 15
15
B
232 240Right-handed alpha
Helix 16
16
B
251 300Right-handed alpha
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There are 6 sheets in PDB entry 2J9T. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
73 75anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
179 182anti-parallel
Strand 3
A
247 250anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
227 230anti-parallel
Strand 3
A
220 222anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 70first strand
Strand 2
B
73 75anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 174first strand
Strand 2
B
179 182anti-parallel
Strand 3
B
247 250anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 202first strand
Strand 2
B
227 230anti-parallel
Strand 3
B
220 222anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il