Analysis of interatomic Contacts of Structural Units in PDB entry:
2J9U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J9U entry

There are 4 chains in PDB entry 2J9U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 148LEU 241
B
 VAL 115CYS 161
C
 PHE 148LEU 241
D
 VAL 115CYS 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2J9U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
149 169Right-handed alpha
Helix 2
2
A
173 192Right-handed alpha
Helix 3
3
A
198 211Right-handed alpha
Helix 4
4
A
219 241Right-handed alpha
Helix 5
5
B
151 156Right-handed alpha
Helix 6
6
B
157 159Right-handed 310
Helix 7
7
C
149 169Right-handed alpha
Helix 8
8
C
173 192Right-handed alpha
Helix 9
9
C
198 211Right-handed alpha
Helix 10
10
C
219 241Right-handed alpha
Helix 11
11
D
151 156Right-handed alpha
Helix 12
12
D
157 159Right-handed 310
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There are 2 sheets in PDB entry 2J9U. Click on sheet of interest to get list of strands forming it: BA, A,

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 119first strand
Strand 2
B
126 129anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
116 119first strand
Strand 2
D
126 129anti-parallel
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