Analysis of interatomic Contacts of Structural Units in PDB entry:
2JA5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JA5 entry

There are 15 chains in PDB entry 2JA5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 2PRO 1455
B
PHE 18PHE 1224
C
SER 2ASP 268
D
SER 4TYR 221
E
ASP 2MET 215
F
LEU 69LEU 155
G
MET 1ILE 171
H
SER 2ARG 146
I
THR 2LYS 117
J
MET 1PRO 65
K
MET 1LEU 114
L
ALA 25ARG 70
P
U 1 A 10
T
T 18 C 21
T
G 23 T 28
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are144 helices in PDB entry 2JA5. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
23 31Right-handed alpha
Helix 2
2
A
95 104Right-handed alpha
Helix 3
3
A
119 128Right-handed alpha
Helix 4
4
A
130 143Right-handed alpha
Helix 5
5
A
203 213Right-handed alpha
Helix 6
6
A
215 222Right-handed alpha
Helix 7
7
A
230 234Right-handed 310
Helix 8
8
A
243 247Right-handed 310
Helix 9
9
A
260 278Right-handed alpha
Helix 10
10
A
285 289Right-handed 310
Helix 11
11
A
293 303Right-handed alpha
Helix 12
12
A
324 330Right-handed alpha
Helix 13
13
A
334 340Right-handed alpha
Helix 14
14
A
368 372Right-handed alpha
Helix 15
15
A
384 395Right-handed alpha
Helix 16
16
A
474 479Right-handed alpha
Helix 17
17
A
494 503Right-handed alpha
Helix 18
18
A
506 511Right-handed alpha
Helix 19
19
A
514 517Right-handed 310
Helix 20
20
A
524 534Right-handed alpha
Helix 21
21
A
543 553Right-handed alpha
Helix 22
22
A
574 579Right-handed alpha
Helix 23
23
A
618 623Right-handed alpha
Helix 24
24
A
628 637Right-handed alpha
Helix 25
25
A
638 661Right-handed alpha
Helix 26
26
A
665 670Right-handed 310
Helix 27
27
A
672 696Right-handed alpha
Helix 28
28
A
709 734Right-handed alpha
Helix 29
29
A
741 750Right-handed alpha
Helix 30
30
A
754 763Right-handed alpha
Helix 31
31
A
793 798Right-handed alpha
Helix 32
32
A
809 828Right-handed alpha
Helix 33
33
A
831 844Right-handed alpha
Helix 34
34
A
867 871Right-handed 310
Helix 35
35
A
889 898Right-handed alpha
Helix 36
36
A
924 947Right-handed alpha
Helix 37
37
A
959 971Right-handed alpha
Helix 38
38
A
982 995Right-handed alpha
Helix 39
39
A
1004 1014Right-handed alpha
Helix 40
40
A
1015 1026Right-handed alpha
Helix 41
41
A
1027 1034Right-handed alpha
Helix 42
42
A
1038 1057Right-handed alpha
Helix 43
43
A
1063 1078Right-handed alpha
Helix 44
44
A
1097 1107Right-handed alpha
Helix 45
45
A
1127 1139Right-handed alpha
Helix 46
46
A
1143 1146Right-handed alpha
Helix 47
47
A
1163 1165Right-handed 310
Helix 48
48
A
1166 1174Right-handed alpha
Helix 49
49
A
1198 1205Right-handed alpha
Helix 50
50
A
1208 1221Right-handed alpha
Helix 51
51
A
1255 1260Right-handed alpha
Helix 52
52
A
1261 1267Right-handed alpha
Helix 53
53
A
1312 1317Right-handed alpha
Helix 54
54
A
1331 1339Right-handed alpha
Helix 55
55
A
1340 1358Right-handed alpha
Helix 56
56
A
1365 1377Right-handed alpha
Helix 57
57
A
1388 1392Right-handed 310
Helix 58
58
A
1395 1400Right-handed alpha
Helix 59
59
A
1404 1415Right-handed alpha
Helix 60
60
A
1423 1429Right-handed alpha
Helix 61
61
A
1436 1439Right-handed 310
Helix 62
62
A
1448 1453Right-handed alpha
Helix 63
63
B
28 41Right-handed alpha
Helix 64
64
B
44 56Right-handed alpha
Helix 65
65
B
57 64Right-handed alpha
Helix 66
66
B
113 121Right-handed alpha
Helix 67
67
B
179 183Right-handed 310
Helix 68
68
B
185 191Right-handed alpha
Helix 69
69
B
282 289Right-handed alpha
Helix 70
70
B
297 302Right-handed alpha
Helix 71
71
B
307 322Right-handed alpha
Helix 72
72
B
326 337Right-handed alpha
Helix 73
73
B
345 359Right-handed alpha
Helix 74
74
B
370 390Right-handed alpha
Helix 75
75
B
400 402Right-handed 310
Helix 76
76
B
408 436Right-handed alpha
Helix 77
77
B
450 464Right-handed alpha
Helix 78
78
B
487 496Right-handed alpha
Helix 79
79
B
515 519Right-handed 310
Helix 80
80
B
551 560Right-handed alpha
Helix 81
81
B
570 574Right-handed 310
Helix 82
82
B
593 605Right-handed alpha
Helix 83
83
B
619 621Right-handed 310
Helix 84
84
B
654 660Right-handed alpha
Helix 85
85
B
661 667Right-handed alpha
Helix 86
86
B
680 687Right-handed alpha
Helix 87
87
B
695 699Right-handed alpha
Helix 88
88
B
744 749Right-handed 310
Helix 89
89
B
752 756Right-handed 310
Helix 90
90
B
763 774Right-handed alpha
Helix 91
91
B
783 788Right-handed 310
Helix 92
92
B
806 812Right-handed 310
Helix 93
93
B
843 848Right-handed alpha
Helix 94
94
B
889 893Right-handed 310
Helix 95
95
B
1013 1017Right-handed 310
Helix 96
96
B
1022 1039Right-handed alpha
Helix 97
97
B
1051 1061Right-handed alpha
Helix 98
98
B
1098 1102Right-handed 310
Helix 99
99
B
1121 1125Right-handed 310
Helix 100
100
B
1131 1142Right-handed alpha
Helix 101
101
B
1143 1152Right-handed alpha
Helix 102
102
B
1197 1210Right-handed alpha
Helix 103
103
C
26 40Right-handed alpha
Helix 104
104
C
59 70Right-handed alpha
Helix 105
105
C
76 80Right-handed 310
Helix 106
106
C
82 86Right-handed 310
Helix 107
107
C
116 118Right-handed 310
Helix 108
108
C
167 171Right-handed 310
Helix 109
109
C
196 201Right-handed alpha
Helix 110
110
C
204 208Right-handed 310
Helix 111
111
C
241 262Right-handed alpha
Helix 112
112
D
30 34Right-handed 310
Helix 113
113
D
54 70Right-handed alpha
Helix 114
114
D
119 134Right-handed alpha
Helix 115
115
D
138 151Right-handed alpha
Helix 116
116
D
158 168Right-handed alpha
Helix 117
117
D
175 183Right-handed alpha
Helix 118
118
D
187 195Right-handed alpha
Helix 119
119
D
203 216Right-handed alpha
Helix 120
120
E
2 26Right-handed alpha
Helix 121
121
E
39 44Right-handed alpha
Helix 122
122
E
54 58Right-handed 310
Helix 123
123
E
67 72Right-handed alpha
Helix 124
124
E
90 104Right-handed alpha
Helix 125
125
E
137 141Right-handed alpha
Helix 126
126
E
143 147Right-handed 310
Helix 127
127
E
157 169Right-handed alpha
Helix 128
128
E
171 175Right-handed 310
Helix 129
129
E
182 188Right-handed alpha
Helix 130
130
F
86 103Right-handed alpha
Helix 131
131
F
116 125Right-handed alpha
Helix 132
132
G
14 18Right-handed 310
Helix 133
133
G
22 33Right-handed alpha
Helix 134
134
G
50 54Right-handed 310
Helix 135
135
G
113 115Right-handed 310
Helix 136
136
J
16 27Right-handed alpha
Helix 137
137
J
31 40Right-handed alpha
Helix 138
138
J
44 53Right-handed alpha
Helix 139
139
J
56 62Right-handed alpha
Helix 140
140
K
5 10Right-handed 310
Helix 141
141
K
39 44Right-handed alpha
Helix 142
142
K
44 49Right-handed alpha
Helix 143
143
K
50 52Right-handed 310
Helix 144
144
K
82 110Right-handed alpha
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There are 50 sheets in PDB entry 2JA5. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, FA, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, CA, CB, CC, CD, CE, A, DB, EA, EB, GA, GB, HA, HB, IA, IB, IC, KA,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1418 1419first strand
Strand 2
A
16 21anti-parallel
Strand 3
B
1212 1217anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
82 90first strand
Strand 2
A
236 241anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
106 107first strand
Strand 2
A
112 113anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
151 152first strand
Strand 2
A
162 163anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
173 177first strand
Strand 2
A
180 184anti-parallel
Strand 3
A
199 201anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
343 345first strand
Strand 2
B
1128 1130anti-parallel
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There are 14 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
348 355first strand
Strand 2
B
1104 1106anti-parallel
Strand 3
A
363 367first strand
Strand 4
A
455 463parallel
Strand 5
A
442 445anti-parallel
Strand 6
A
455 463anti-parallel
Strand 7
A
455 463parallel
Strand 8
A
363 367parallel
Strand 9
A
468 470anti-parallel
Strand 10
A
348 355parallel
Strand 11
A
486 490anti-parallel
Strand 12
A
348 355anti-parallel
Strand 13
B
1104 1106anti-parallel
Strand 14
A
348 355anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
375 376first strand
Strand 2
A
431 435anti-parallel
Strand 3
A
402 407anti-parallel
Strand 4
A
411 413anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
512 513first strand
Strand 2
A
518 519anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
540 542first strand
Strand 2
A
571 573anti-parallel
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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
588 589first strand
Strand 2
A
606 608anti-parallel
Strand 3
A
611 614anti-parallel
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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
766 767first strand
Strand 2
A
799 800anti-parallel
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There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
849 850first strand
Strand 2
A
856 857anti-parallel
Strand 3
A
863 865anti-parallel
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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
879 882first strand
Strand 2
A
953 956anti-parallel
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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1117 1119first strand
Strand 2
A
1303 1307anti-parallel
Strand 3
A
1283 1287anti-parallel
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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1141 1142first strand
Strand 2
A
1272 1274anti-parallel
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There are 5 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1224 1228first strand
Strand 2
A
1237 1242anti-parallel
Strand 3
A
1194 1197anti-parallel
Strand 4
A
1147 1153anti-parallel
Strand 5
I
42 45anti-parallel
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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1290 1292first strand
Strand 2
A
1298 1300anti-parallel
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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
143 147first strand
Strand 2
F
132 137anti-parallel
Strand 3
A
1441 1445anti-parallel
Strand 4
G
59 61anti-parallel
Strand 5
G
68 73anti-parallel
Strand 6
G
8 13anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
91 97first strand
Strand 2
B
127 133anti-parallel
Strand 3
B
166 169anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
101 103first strand
Strand 2
B
109 111anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
203 205first strand
Strand 2
B
208 211anti-parallel
Strand 3
B
481 482anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
215 218first strand
Strand 2
B
404 407anti-parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
224 227first strand
Strand 2
B
236 242anti-parallel
Strand 3
B
252 256anti-parallel
Strand 4
B
270 272anti-parallel
Strand 5
B
280 281anti-parallel
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There are 7 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
544 545first strand
Strand 2
B
633 639anti-parallel
Strand 3
B
690 694anti-parallel
Strand 4
B
633 639anti-parallel
Strand 5
B
703 704first strand
Strand 6
B
740 741parallel
Strand 7
B
633 639anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
563 564first strand
Strand 2
B
589 590anti-parallel
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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
585 586first strand
Strand 2
B
579 582anti-parallel
Strand 3
B
623 627parallel
Strand 4
B
614 617anti-parallel
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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
793 796first strand
Strand 2
B
853 861anti-parallel
Strand 3
B
961 972anti-parallel
Strand 4
B
948 957anti-parallel
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There are 2 strands in BJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
820 827first strand
Strand 2
B
1086 1093anti-parallel
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There are 4 strands in BK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
979 980first strand
Strand 2
B
988 994anti-parallel
Strand 3
B
838 842parallel
Strand 4
B
1010 1011anti-parallel
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There are 2 strands in BL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
910 912first strand
Strand 2
B
939 940anti-parallel
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There are 2 strands in BM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
915 916first strand
Strand 2
B
935 936anti-parallel
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There are 2 strands in BN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1158 1163first strand
Strand 2
B
1191 1196anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
7 8first strand
Strand 2
C
17 23anti-parallel
Strand 3
C
228 233anti-parallel
Strand 4
C
176 177anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
45 46first strand
Strand 2
C
157 160anti-parallel
Strand 3
C
97 100anti-parallel
Strand 4
C
119 120anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
48 49first strand
Strand 2
L
67 68anti-parallel
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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
53 54first strand
Strand 2
C
152 154anti-parallel
Strand 3
C
102 104anti-parallel
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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
111 114first strand
Strand 2
C
143 147anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
36 38first strand
Strand 2
D
44 46anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
49 50first strand
Strand 2
G
2 5anti-parallel
Strand 3
G
76 79anti-parallel
Strand 4
G
44 48anti-parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
60 62first strand
Strand 2
E
78 81anti-parallel
Strand 3
E
107 112parallel
Strand 4
E
131 136parallel
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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
177 178first strand
Strand 2
E
207 214parallel
Strand 3
E
196 201anti-parallel
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There are 12 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
86 95first strand
Strand 2
G
142 153anti-parallel
Strand 3
G
98 102first strand
Strand 4
G
86 95anti-parallel
Strand 5
G
107 111first strand
Strand 6
G
98 102anti-parallel
Strand 7
G
142 153first strand
Strand 8
G
86 95anti-parallel
Strand 9
G
156 162first strand
Strand 10
G
107 111parallel
Strand 11
G
169 170first strand
Strand 12
G
142 153anti-parallel
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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
130 131first strand
Strand 2
G
136 137anti-parallel
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There are 7 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
54 58first strand
Strand 2
H
7 16anti-parallel
Strand 3
H
24 30anti-parallel
Strand 4
H
37 42anti-parallel
Strand 5
H
121 127anti-parallel
Strand 6
H
112 118anti-parallel
Strand 7
H
100 106anti-parallel
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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
95 98first strand
Strand 2
H
141 144anti-parallel
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There are 3 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
15 19first strand
Strand 2
I
24 28anti-parallel
Strand 3
I
35 37anti-parallel
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There are 2 strands in IB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
70 71first strand
Strand 2
I
83 84anti-parallel
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There are 2 strands in IC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
86 87first strand
Strand 2
I
99 100anti-parallel
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There are 4 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
21 23first strand
Strand 2
K
30 36anti-parallel
Strand 3
K
70 77anti-parallel
Strand 4
K
56 62anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il